agapow Goto Github PK

genome-subway-py

Experiment in Processing, visualising genomes in subway diagram

graph4ipy

Visualising graphs in IPython

hobo-protest

hobo-weatherman

A hobo retool of weatherman

memeparse

Parsing Meme results files for motif information (if you're too dumb to have noticed that BioPython has a module for this)

mesa-revenant

Revivinh MeSA to a modern makefile format and more recent versions of GCC

ml-and-cancer-lecture

Lecture on machine learning for cancer research

multilocus

Analysis of multi-locus population genetic data

omegamapsum

Routines to summarize and analyse Omegamap output

omegamip

An MPI-enabled version of omegaMap (see http://www.danielwilson.me.uk).

pandoc-markdown-presentations

Writing (various format) presentations in markdown, via pandoc: working examples

pelican-ipynb

Pelican plugin for blogging with IPython Notebooks

pelican-sober

Light and clean theme for a pelican blog

plonetheme.culicoides

A Plone theme for culicoides.net

plonetheme.p2

A visual theme for Plone 3.0, based on the P2 theme by Automatik

protest

proficiency testing station

psicons.core

Reproducible scientific & analytical workflows

py-dictmunger

Transforming and filtering Python dictionaries

py-fyi

Simple logging and notifications for Python

py-gsp

Generalized Sequence Pattern matching algorithm in Python

py-konval

Data validation & conversion for Python

py-phylo-core

Python classes for representing phylogenetic trees

py-phylo-newick

Parsing and writing routines for Newick format phylogenies

py-phylo-nexus

A reader for phylogenies in a nexus format

py-qanda

Simple text prompts and validation for user input

pycaphelper

Utilities for working with PyCap (which itself works with REDCap)

rb-epi-dev

Relais development library for Ruby

rb-relais-bio

Wrappers and helpers for some of BioRuby and other bioinformatic analysis

rb-relais-dev

Development utilities for the Ruby version of the Relais epiinformatics suite

rbp-book

Ruby Best Practices, by Gregory Brown