ahmetkrgztr/heviai_picai

HeviAI_picai

Welcome to our PICAI Challenge submission repository! We've developed an end-to-end solution for prostate segmentation and lesion detection. This repository contains everything you need to understand, implement, and extend our solution.

Citation

If you find this project useful, we would be grateful if you cite this paper:

• Karagoz, A., Seker, M. E., Yergin, M., Kan, T. A., Kartal, M. S., Karaarslan, E., ... & Oksuz, I. (2023). Prostate Lesion Estimation using Prostate Masks from Biparametric MRI. arXiv preprint arXiv:2301.09673

heviai_picai's Issues

Clarification on AbdomenMRUS-prostate-segmentation training directory please

Hi,

Looking at the AbdomenMRUS-prostate-segmentation/training directory in module whole_gland_seg_archive.py

I see reference on line 317 to ds-config-all.json:

# read subject list of cases without patient overlap with PI-CAI test/validation sets with open(project_root / "joeran/Data/ds-config/V2_ZonalSegmentation299/ds-config-all.json") as fp: subject_list = json.load(fp)['subject_list']

Is that something I need to create or is it generally available?

Also although I can download the prostate158 and prostatex datasets there is also reference to a RNMC dataset - lines 336. Is this publicly available?

Thanks in advance for any help.