alaminzju Goto Github PK
Name: Alamin
Type: User
Alamin's Projects
targeted_transcriptomics
Mair and Erickson, A targeted multi-omic analysis approach measures protein expression and low abundance transcripts on the single cell level
tenet
TENET is a tool for reconstructing gene regulatory networks from pseudo-time ordered single-cell transcriptomic data.
trac-looping-methods
trimgalore
A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data
utmost
UTMOST (unified test for molecular signatures) is a method for cross-tissue gene expression imputation for transcriptome-wide association analyses.
varca
Use an ensemble of variant callers to call variants from ATAC-seq data
vardict
VarDict
variantspark
machine learning for genomic variants
vartrix
Single-Cell Genotyping Tool
vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
zinbwave-deseq2
Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
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