alan-collins Goto Github PK
Name: Alan Collins
Type: User
Company: IHRT, Inc.
Twitter: Alan__Collins
Location: Atlanta, GA
Alan Collins's Projects
cfrl18_snp_support
Scripts used to assess SNP confidence for the CFRL18 study
colour_game
Simple python game where you organize coloured squares along gradients in a grid.
crispr_comparison_toolkit
Tools to analyze the differences and similarities between CRISPR arrays
fpdf2
Simple PDF generation for Python
mapa-like-search
search genomes for instances of two adhesins and store some features of those adhesins
neisseria-prophage-paper
Scripts used in analyses for Orazi, Collins, and Whitaker in prep
network-paper
R scripts for data manipulation and figure production for P. fluorescens cyclic di-GMP network paper.
spelltower-solver
spine-nucmer-snps
A collection of scripts to process Spine and Nucmer outputs to analyse SNPs from core genome alignments.
subtree_dists
Functions to calculate summary stats of distances within and between subtrees
synthetic_reads
Generate synthetic Illumina reads using a provided multifasta.
webtree
Create and render dendrograms in a web browser using pyscript
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