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adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

airflow-provider-pulumi

amazon-athena-execution-parameters-blog

amazon-emr-with-delta-lake

Amazon EMR Notebook to show how to read from and write to Delta tables with Amazon EMR

amazon-genomics-cli

amazon-omics-end-to-end-genomics

amazon-omics-tutorials

automation-api-examples

Examples for the Pulumi Automation API https://pkg.go.dev/github.com/pulumi/pulumi/sdk/v3/go/auto?tab=doc

awesome-federated-machine-learning

Everything about federated learning, including research papers, books, codes, tutorials, videos and beyond

aws-genomics-workflows

Genomics Workflows on AWS

bison-fly

Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are presenting step by step how we have been applying UAV data on our breeding program. This is a open source R code from where anyone can use and adept for different crops. All suggestions are welcome. Help us to bui

bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

bwa-benchmarks

cdk-emrserverless-with-delta-lake

This construct builds some elements for you to quickly launch an EMR Serverless application. After submitting the Emr Serverless job, you could also launch an EMR notebook via cluster template to check the outcome from the EMR Serverless application.

city_pipeline

a Data warehouse tech stack with postgres , DBT, Airflow

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cpg-cost-control

A Cloud Function to handle GCP billing budget notifications.

cpg-infrastructure

This repository is used to manage the infrastructure at the CPG

cropgbm-tutorial-data

datasciencecousera

Coursera Data Science Course

deepgp

A tool to implement Genomic Prediction Experiments using Deep Learning

devops-for-databricks

devops-for-databricks

dl-imputation

dl_wheat

dlpipeline

Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning

emr-serverless-samples

Example code for running Spark and Hive jobs on EMR Serverless.

fatty_acid_nirs_model

Using near-infrared spectroscopy (NIRS) and machine learning to determine oleic acid content from peanut raw grains

flask-weixin

Weixin implementation in Flask.

galaxy

Data intensive science for everyone.

genomics-pipelines

secondary analysis pipelines parallelized with apache spark