albertcrowley/nidm-training

nidm-training's Issues

containerized script for section1

@dbkeator @albertcrowley - perhaps you can test to see if this works.

mkdir section1
cd section1
docker run -i --rm kaczmarj/neurodocker:master generate singularity \
  --base neurodebian:latest --pkg-manager apt \
  --install graphviz git wget \
  --miniconda \
    conda_install="python=3 pytest graphviz pip reprozip reprounzip \
       requests rdflib fuzzywuzzy python-levenshtein pygithub pandas" \
    pip_install="owlready2 pybids duecredit \
     https://github.com/incf-nidash/PyNIDM/archive/a90b3f47dbdafb9504f13a3a8d85fdff931cc45c.zip" \
    create_env="section1" \
    activate=true \
  --run-bash "cd /opt && \
    git clone https://github.com/incf-nidash/PyNIDM.git" > Singularity

followed by:

sudo singularity build section1.img Singularity

for docker replace singularity/Singularity with docker/Dockerfile to generate the docker version.
and then do: docker build -t section1:latest .

this pulls in the latest version. this is only being made available so people can create and do things outside the vm in containers. as far as i know the current plan is to install these tools in the main vm for the ohbm training.