alec-hoyland/crabsort

🦀🦀🦀sort spikes. +Neural networks powered. + fully automated

🦀 crabsort

Installation

Using a MATLAB toolbox

The simplest way to install crabsort is to download this toolbox. Drag it onto your MATLAB workspace, and it should automatically install itself.

Using git

Clone these repos:

# bash
git clone https://github.com/sg-s/crabsort
git clone https://github.com/sg-s/puppeteer
git clone https://github.com/sg-s/srinivas.gs_mtools

and add the all to your MATLAB path.

Updating and uninstalling

crabsort supports built-in methods to upgrade and update:

% matlab
crabsort.update
crabsort.uninstall

Usage

[more detailed docs coming soon...]

Keyboard actions

Key	Action
a	Scroll to beginning of file
z	Scroll to end of file
Spacebar	Jump to next uncertain spike (as predicted by Neural Network)
g	generate data for Neural network
⇧ + ↑	jump to the weirdest spike
⇧ + ↓	jump to a next less weird spike
p	Predict spikes using Neural network
r	reset zoom
0	Set channel as having no spikes
↑	Select channel above currently chosen channel
↓	Select channel below currently chosen channel
→	Load next file in dataset
←	Load next file in dataset
p	Predict spikes using Neural network

License

GPL v3

If you plan to use crabsort for a publication, please write to me for appropriate citation.