alexpersa7/bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Bioconvert

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

contributions:	Want to add a convertor ? Please join bioconvert#1
issues:	Please use https://github.com/bioconvert/bioconvert/issues

Installation

In order to install bioconvert, you can use pip:

pip install bioconvert

We also provide releases on bioconda (http://bioconda.github.io/):

conda install bioconvert

and Singularity container are available. See http://bioconvert.readthedocs.io/en/master/user_guide.html#installation for details.

Usage

bioconvert fastq2fasta input.fastq output.fasta
bioconvert gz2dsrc input.fq.gz output.dsrc2
bioconvert bam2bed input.bam output.bed
bioconvert --help

Available Converters