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r4ds

R for data science: a book

racon

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116

raincloudplots

Code and tutorials to visualise your data that is both beautiful *and* statistically valid

rcharts

Interactive JS Charts from R

rcharts_nyt_home_price

react-shiny-template

React - Shiny Template

rhandsontable

An htmlwidgets implementation of Handsontable.js

ribbon

A genome browser that shows long reads and complex variants better

rna-seq-in-the-cloud

An Easy to Use Analysis System for All Human Public bulk RNAseq Data!

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rnaseqview

RNA-seq Viewer Team at the NCBI-assisted Boston Genomics Hackathon

rshinyapps

My Apps for Rshiny

scrna.seq.course

Analysis of single cell RNA-seq data course

shiny-examples

shiny-gallery

Code and other documentation for apps in the Shiny Gallery ✨

shiny-phyloseq

An interactive web application for demonstrating and using phyloseq.

shiny-seq

Shiny-Seq: A web based interactive pipeline to analyze RNA-Seq data

shinyapps

shinychromosome

an R/Shiny application for interactive creation of non-circular plots of whole genomes

shinycircos

an R/shiny application for creation of Circos plot interactively

shinyjstutorials

tutorials materials on R/Shiny bindings to popular javascript libraries

shinytree

Shiny integration with the jsTree library

shinywidgets

shinyWidgets : Extend widgets available in shiny

sniffles

Structural variation caller using third generation sequencing

sortablejs

Create and reorder lists with drag-and-drop. For use with modern browsers and touch devices

sourmash

Compute and compare MinHash signatures for DNA data sets.

star

RNA-seq aligner

startapp

The START App: R Shiny Transcriptome Analysis Resource Tool

stats337

Readings in applied data science

streamz

Real-time stream processing for python