MouseConnectivityCache.get_structure_mask error

[dyf]

MouseConnectivityCache.get_structure_mask error

[kamdh]

I also have the same problem using this function

[kamdh]

And when I pass a list, it wants a number:
TypeError Traceback (most recent call last)
in ()
----> 1 mcc.get_structure_mask([315.])

/home/kameron/local/anaconda/lib/python2.7/site-packages/allensdk-0.10.1-py2.7.egg/allensdk/core/mouse_connectivity_cache.pyc in get_structure_mask(self, structure_id, file_name, annotation_file_name)
597 """
598
--> 599 file_name = self.get_cache_path(file_name, self.STRUCTURE_MASK_KEY, structure_id)
600
601 if os.path.exists(file_name):

/home/kameron/local/anaconda/lib/python2.7/site-packages/allensdk-0.10.1-py2.7.egg/allensdk/api/cache.pyc in get_cache_path(self, file_name, manifest_key, *args)
61 return file_name
62 elif self.manifest:
---> 63 return self.manifest.get_path(manifest_key, *args)
64
65 return None

/home/kameron/local/anaconda/lib/python2.7/site-packages/allensdk-0.10.1-py2.7.egg/allensdk/config/manifest.pyc in get_path(self, path_key, *args)
213
214 if args != None and len(args) != 0:
--> 215 path = path_spec % args
216 else:
217 path = path_spec

TypeError: %d format: a number is required, not list

[kamdh]

Nile and I were able to fix this by changing the get_structure_mask function in one line:
structure_ids = ont.get_descendant_ids([structure_id])

[dyf]

Thanks! That change is in 0.11.0.