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Ammar Aziz's Projects

nf-mvp icon nf-mvp

A minimum viable Nextflow pipeline (Bioinformatics Clinic)

nomeeting icon nomeeting

https://sbmueller.github.io/nohello/ Website on chat etiquette. Copied from nohello.com.

prepare.py icon prepare.py

Create a 'file of filenames' (FOFN) of samples for pipeline input - From Bactopia

seasonal-flu icon seasonal-flu

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

seqsender icon seqsender

Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories

snipit icon snipit

snipit: summarise snps relative to your reference sequence

wf-artic icon wf-artic

ARTIC SARS-CoV-2 workflow and reporting

wfi icon wfi

whofluIRMA - influenza assembly pipeline

yml2vcf icon yml2vcf

Simple script to convert yml phe-genomics/variant_definitions to vcf

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