Comments (1)
In favor of web API
from antigen.garnish.
Related Issues (20)
- Error: unset environmental variable for antigen.garnish data directory HOT 5
- garnish_affinity ; data.table error, function breaks after it starts extracting cDNA changes HOT 13
- Unable to download netMHC data tar from DTU. HOT 11
- Nomenclature MHC II HOT 1
- garnish_antigens filtering HOT 2
- Update tutorial to 2.3 HOT 1
- No outputs for some queries when estimating foreignness scores HOT 2
- Using own vcf file in docker HOT 2
- Running netMHC HOT 31
- garnish_affinity process killed when running all human alleles HOT 3
- Understanding garnish_antigens output table HOT 1
- Antigen Garnish output and Expression file HOT 21
- dai_uuid output column HOT 3
- Question about neoantigen abundance (TPM) from "Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction" HOT 1
- no score calculated HOT 3
- Foreignness for mouse data HOT 2
- Antigen.garnish missing columns in output file with fusion peptides HOT 4
- Illegal argument in garnish_variants
- netMHCII: not found
- Skipping BLAST because ncbiblast+ is not in PATH
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from antigen.garnish.