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Python library to work with HPO (Human Phenotype Ontology) terms and their gene/disease associations

Home Page: https://esbme.com/pyhpo/docs

License: MIT License

Python 99.70% Makefile 0.30%
hpo hpo-similarity clinical-informatics ontology human-phenotype-ontology bioinformatics phenotype-ontologies

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pyhpo_v1's Issues

Handle obsolete terms

How should obsolete terms be handled:

  • Direkt link to new term
  • Raise error
  • Allow flexibility

Better document data update procedures

The current documentation lacks information about how to organize HPO-data updates without updating the package. Describe the different workflows better:

  • Download new data via download_data
  • Specify custom data folders

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