Comments (19)
SyN requires significantly more memory, which can lead to the process being killed if there is not enough available
from ants.
SyN 需要更多的内存,如果没有足够的可用内存,这可能会导致进程被终止
My memory is sufficient, and it can be successfully run by calling the script file locally on my computer. Why can't it be done in docker?
from ants.
Is there any master who has the experience to tell me, this is very urgent.
from ants.
I'm using antsx/ants images
from ants.
Or can anyone tell me about antsx/ants and antsx/antspy in dockerhub: latest
How do I use the containers created by these two images?
from ants.
Try reading https://docs.docker.com/config/containers/resource_constraints/
from ants.
If you're using docker desktop, there is a memory limit
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https://docs.docker.com/desktop/settings/mac/
https://docs.docker.com/desktop/settings/windows/
https://docs.docker.com/desktop/settings/linux/
from ants.
It shouldn't be a problem of insufficient memory, could it be that there is a problem with my shell script configuration?
I still have 18GB of RAM available on my computer when I'm not running programs
from ants.
I don't recognize these graphs, but the top right one appears to show 11.68 Gb of memory available.
from ants.
That's right, so why is the program being killed?
from ants.
the docker container does not have enough memory. that's different than the machine on which the container is being run.
from ants.
ok,i will Use it on a different computer
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Thanks to both of you, I now put it on the linux host to run docker but I found that linux will use more memory, for example: windows only needs more than 10 G, while linux needs more than 100 G, why is this?
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What are the dimensions of the images?
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from ants.
So 400x274x460 and 456x320x528. Those are big images, and the registration needs to store those plus the associated transforms. Simplest solution to reduce footprint would be to run with --float 1
.
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ok,i will try it ,thank you very much.
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probably worth trying to blur + downsample
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Related Issues (20)
- Workflow for building registration using docker HOT 4
- Ubuntu ANTs build is broken (repository version) HOT 1
- Jacobian through single-subject template HOT 15
- antsApplyTransforms on 4D BOLD images HOT 6
- ANTs apply transform for template construction has hardcoded dimension = 3 HOT 2
- antsApplyTransforms allows `-d 4` with a 3D warp field HOT 2
- Can't extract brain from skull on T1-weighed MRI images HOT 13
- Segmentation-aware template building HOT 3
- ANTs and SPM compatibility HOT 3
- Running into "error while loading shared libraries" while using antsApplyTransforms HOT 2
- Multivariate template construction with > 10 modalities HOT 2
- Deprecation of LabelGeometryImageFilter (used in LabelGeometryMeasures) HOT 12
- Optimizing EPI to T1 MPRAGE registration HOT 4
- Error message at antsApplyTransform HOT 6
- running ANTs binaries on a windows laptop reports error: "could not find VCRUNTIME140_1.dll" HOT 2
- ResampleImage usage HOT 3
- Building template in ANTs HOT 6
- Can't open the last modality with antsMultivariateTemplateConstruction2.sh HOT 3
- REQUEST: rewrite the readme? HOT 10
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