Comments (5)
Chaircrusher
commented on May 28, 2024
Do you know which filter is actually causing this problem? itk::ImageToImageFilter::VerifyInputInformation calls vnl_vector::is_equal and vnl_matrix::is_equal. These do comparisons within a tolerance set by ImageToImageFilter::m_CoordinateTolerance, which by default is 1.0e-6.
That's actually a fairly liberal tolerance; if the filters are throwing this exception, they either need to implement their own VerifyInputInformation, or there is a real problem in the congruence of the physical spaces.
from ants.
chrisgorgo
commented on May 28, 2024
I'm experiencing similar error without using float (sticking with double):
kalifornien:/scr/adenauer1/ants$ antsRegistration --dimensionality 3 --output transform --use-histogram-matching 1 --initial-moving-transform ../ants_SyN_masked/transform0Warp.nii.gz --transform BSplineSyN[0.1,26,0,3] --metric CC[/usr/share/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz, /scr/adenauer1/ants/linear.nii,1,4] --convergence 100x70x50x20 --smoothing-sigmas 3x2x1x0 --shrink-factors 6x4x2x1
Using double precision for computations.
=============================================================================
The composite transform is comprised of the following transforms (in order):
1. ../ants_SyN_masked/transform0Warp.nii.gz (type = DisplacementFieldTransform)
=============================================================================
number of levels = 4
fixed image: /usr/share/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz
moving image: /scr/adenauer1/ants/linear.nii
Dimension = 3
Number of stages = 1
Use Histogram Matching true
Winsorize Image Intensities false
Lower Quantile = 0
Upper Quantile = 1
Stage 1 State
Metric = CC
Fixed Image = Image (0x2f72690)
RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 1544
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 1383
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [182, 218, 182]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [182, 218, 182]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [182, 218, 182]
Spacing: [1, 1, 1]
Origin: [-90, 126, -72]
Direction:
1 0 0
0 -1 0
0 0 1
IndexToPointMatrix:
1 0 0
0 -1 0
0 0 1
PointToIndexMatrix:
1 0 0
0 -1 0
0 0 1
Inverse Direction:
1 0 0
0 -1 0
0 0 1
PixelContainer:
ImportImageContainer (0x2f6fb10)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 1380
Debug: Off
Object Name:
Observers:
none
Pointer: 0x2b043e6ac010
Container manages memory: true
Size: 7221032
Capacity: 7221032
Moving Image = Image (0x2f6b880)
RTTI typeinfo: itk::Image<double, 3u>
Reference Count: 2
Modified Time: 1545
Debug: Off
Object Name:
Observers:
none
Source: (none)
Source output name: (none)
Release Data: Off
Data Released: False
Global Release Data: Off
PipelineMTime: 0
UpdateMTime: 1542
RealTimeStamp: 0 seconds
LargestPossibleRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [182, 218, 182]
BufferedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [182, 218, 182]
RequestedRegion:
Dimension: 3
Index: [0, 0, 0]
Size: [182, 218, 182]
Spacing: [1, 1, 1]
Origin: [-90, 126, -72]
Direction:
1 0 0
0 -1 0
0 0 1
IndexToPointMatrix:
1 0 0
0 -1 0
0 0 1
PointToIndexMatrix:
1 0 0
0 -1 0
0 0 1
Inverse Direction:
1 0 0
0 -1 0
0 0 1
PixelContainer:
ImportImageContainer (0x2f70640)
RTTI typeinfo: itk::ImportImageContainer<unsigned long, double>
Reference Count: 1
Modified Time: 1539
Debug: Off
Object Name:
Observers:
none
Pointer: 0x2b0441dc4010
Container manages memory: true
Size: 7221032
Capacity: 7221032
Weighting = 1
Sampling Strategy = none
NumberOfBins = 1
Radius = 4
Sampling percentage = 1
Transform = BSplineSyN
Gradient Step = 0.1
Update Field Sigma (voxel space) = 0
Total Field Sigma (voxel space) = 0
Update Field Time Sigma = 0
Total Field Time Sigma = 0
Number of Time Indices = 0
Number of Time Point Samples = 0
Registration using 1 total stages.
Stage 0
iterations = 100x70x50x20
convergence threshold = 1e-06
convergence window size = 10
number of levels = 4
Shrink factors (level 1 out of 4): [6, 6, 6]
Shrink factors (level 2 out of 4): [4, 4, 4]
Shrink factors (level 3 out of 4): [2, 2, 2]
Shrink factors (level 4 out of 4): [1, 1, 1]
smoothing sigmas per level: [3, 2, 1, 0]
preprocessing: histogram matching the images
using the CC metric (radius = 4, weight = 1)
Using default NONE metricSamplingStrategy
*** Running B-spline SyN registration (updateMeshSizeAtBaseLevel = [7, 9, 7], totalMeshSizeAtBaseLevel = [0, 0, 0]) ***
Current level = 1 of 4
number of iterations = 100
shrink factors = [6, 6, 6]
smoothing sigmas = 3 vox
required fixed parameters = [30, 36, 30, -86.5, 122.5, -68.5, 6, 6, 6, 1, 0, 0, 0, -1, 0, 0, 0, 1]
XDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
WDIAGNOSTIC, 1, -7.807433469000e-01, 1.797693134862e+308, 1.5243e+00, 1.5242e+00,
WDIAGNOSTIC, 2, -7.824985387568e-01, 1.797693134862e+308, 1.8216e+00, 2.9727e-01,
WDIAGNOSTIC, 3, -7.841857720773e-01, 1.797693134862e+308, 2.1036e+00, 2.8203e-01,
WDIAGNOSTIC, 4, -7.856564459842e-01, 1.797693134862e+308, 2.3934e+00, 2.8973e-01,
WDIAGNOSTIC, 5, -7.869333696374e-01, 1.797693134862e+308, 2.6794e+00, 2.8609e-01,
WDIAGNOSTIC, 6, -7.882013679583e-01, 1.797693134862e+308, 2.9641e+00, 2.8463e-01,
WDIAGNOSTIC, 7, -7.893345491175e-01, 1.797693134862e+308, 3.2617e+00, 2.9763e-01,
WDIAGNOSTIC, 8, -7.904293713367e-01, 1.797693134862e+308, 3.5489e+00, 2.8721e-01,
WDIAGNOSTIC, 9, -7.914969838079e-01, 1.797693134862e+308, 3.8484e+00, 2.9945e-01,
WDIAGNOSTIC, 10, -7.924752733705e-01, 9.355939664866e-04, 4.1486e+00, 3.0029e-01,
WDIAGNOSTIC, 11, -7.932677091932e-01, 7.852530111584e-04, 4.4488e+00, 3.0016e-01,
WDIAGNOSTIC, 12, -7.939260235063e-01, 6.613280173870e-04, 4.7370e+00, 2.8824e-01,
WDIAGNOSTIC, 13, -7.945001158981e-01, 5.588707971683e-04, 5.0343e+00, 2.9727e-01,
WDIAGNOSTIC, 14, -7.949769189912e-01, 4.698964055225e-04, 5.3279e+00, 2.9360e-01,
WDIAGNOSTIC, 15, -7.953406409922e-01, 3.887885582880e-04, 5.6113e+00, 2.8342e-01,
WDIAGNOSTIC, 16, -7.956315513545e-01, 3.169466665355e-04, 5.9004e+00, 2.8912e-01,
WDIAGNOSTIC, 17, -7.958655253009e-01, 2.530694620223e-04, 6.1777e+00, 2.7724e-01,
WDIAGNOSTIC, 18, -7.961183190603e-01, 1.995557973640e-04, 6.4790e+00, 3.0136e-01,
WDIAGNOSTIC, 19, -7.963042287376e-01, 1.565922737426e-04, 6.7681e+00, 2.8905e-01,
WDIAGNOSTIC, 20, -7.964269020391e-01, 1.229664638404e-04, 7.0637e+00, 2.9564e-01,
WDIAGNOSTIC, 21, -7.965822142226e-01, 9.718985744912e-05, 7.3508e+00, 2.8702e-01,
WDIAGNOSTIC, 22, -7.967126438470e-01, 7.741133670639e-05, 7.6594e+00, 3.0860e-01,
WDIAGNOSTIC, 23, -7.967315991381e-01, 6.123245785656e-05, 7.9413e+00, 2.8192e-01,
WDIAGNOSTIC, 24, -7.967673652349e-01, 4.828848305207e-05, 8.2198e+00, 2.7856e-01,
WDIAGNOSTIC, 25, -7.967621822854e-01, 3.696300890311e-05, 8.5056e+00, 2.8581e-01,
WDIAGNOSTIC, 26, -7.968399381158e-01, 2.809164724515e-05, 8.7936e+00, 2.8799e-01,
WDIAGNOSTIC, 27, -7.968674175305e-01, 2.062091300102e-05, 9.0828e+00, 2.8916e-01,
WDIAGNOSTIC, 28, -7.969471255377e-01, 1.598424331081e-05, 9.3831e+00, 3.0030e-01,
WDIAGNOSTIC, 29, -7.968810302086e-01, 1.164290206259e-05, 9.6752e+00, 2.9207e-01,
WDIAGNOSTIC, 30, -7.968807804740e-01, 7.971321558629e-06, 9.9543e+00, 2.7914e-01,
WDIAGNOSTIC, 31, -7.969195385805e-01, 5.994473765272e-06, 1.0240e+01, 2.8600e-01,
WDIAGNOSTIC, 32, -7.968526781827e-01, 4.258712957159e-06, 1.0529e+01, 2.8895e-01,
WDIAGNOSTIC, 33, -7.968278830906e-01, 2.187522083766e-06, 1.0822e+01, 2.9261e-01,
WDIAGNOSTIC, 34, -7.970773077322e-01, 3.076729032575e-06, 1.1109e+01, 2.8732e-01,
WDIAGNOSTIC, 35, -7.970083541697e-01, 2.782383086496e-06, 1.1398e+01, 2.8851e-01,
WDIAGNOSTIC, 36, -7.969717798456e-01, 2.692520773277e-06, 1.1679e+01, 2.8162e-01,
WDIAGNOSTIC, 37, -7.968661692902e-01, 1.627447761283e-06, 1.1976e+01, 2.9648e-01,
WDIAGNOSTIC, 38, -7.967909625666e-01, 5.510098876477e-07, 1.2260e+01, 2.8421e-01,
Current level = 2 of 4
number of iterations = 70
shrink factors = [4, 4, 4]
smoothing sigmas = 2.0000e+00 vox
required fixed parameters = [45, 54, 45, -87.5, 123.5, -69.5, 4, 4, 4, 1, 0, 0, 0, -1, 0, 0, 0, 1]
XDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
WDIAGNOSTIC, 1, -7.710102284037e-01, 1.797693134862e+308, 1.4258e+01, 1.9976e+00,
WDIAGNOSTIC, 2, -7.748677692146e-01, 1.797693134862e+308, 1.5167e+01, 9.0911e-01,
WDIAGNOSTIC, 3, -7.790675177968e-01, 1.797693134862e+308, 1.6052e+01, 8.8559e-01,
WDIAGNOSTIC, 4, -7.828436140554e-01, 1.797693134862e+308, 1.6928e+01, 8.7569e-01,
WDIAGNOSTIC, 5, -7.861370005545e-01, 1.797693134862e+308, 1.7822e+01, 8.9385e-01,
WDIAGNOSTIC, 6, -7.891419008214e-01, 1.797693134862e+308, 1.8715e+01, 8.9327e-01,
WDIAGNOSTIC, 7, -7.917679605200e-01, 1.797693134862e+308, 1.9633e+01, 9.1807e-01,
WDIAGNOSTIC, 8, -7.939367221719e-01, 1.797693134862e+308, 2.0544e+01, 9.1040e-01,
WDIAGNOSTIC, 9, -7.956841422919e-01, 1.797693134862e+308, 2.1405e+01, 8.6149e-01,
WDIAGNOSTIC, 10, -7.974221352482e-01, 2.158541482106e-03, 2.2296e+01, 8.9058e-01,
WDIAGNOSTIC, 11, -7.989145370382e-01, 1.745216598845e-03, 2.3189e+01, 8.9273e-01,
WDIAGNOSTIC, 12, -8.002209503154e-01, 1.398050511259e-03, 2.4057e+01, 8.6854e-01,
WDIAGNOSTIC, 13, -8.013537936133e-01, 1.124786932673e-03, 2.4954e+01, 8.9689e-01,
WDIAGNOSTIC, 14, -8.021942130124e-01, 9.062730611692e-04, 2.5898e+01, 9.4390e-01,
WDIAGNOSTIC, 15, -8.031869069772e-01, 7.360726443068e-04, 2.6805e+01, 9.0698e-01,
WDIAGNOSTIC, 16, -8.040909472253e-01, 6.063921312430e-04, 2.7718e+01, 9.1321e-01,
WDIAGNOSTIC, 17, -8.048837456096e-01, 5.075622385734e-04, 2.8596e+01, 8.7772e-01,
WDIAGNOSTIC, 18, -8.055492482351e-01, 4.288776494007e-04, 2.9472e+01, 8.7625e-01,
WDIAGNOSTIC, 19, -8.061735625521e-01, 3.630483432817e-04, 3.0346e+01, 8.7414e-01,
WDIAGNOSTIC, 20, -8.068841969649e-01, 3.134600255625e-04, 3.1225e+01, 8.7917e-01,
WDIAGNOSTIC, 21, -8.074851582061e-01, 2.745334682261e-04, 3.2119e+01, 8.9384e-01,
WDIAGNOSTIC, 22, -8.080671272958e-01, 2.438535843800e-04, 3.3001e+01, 8.8229e-01,
WDIAGNOSTIC, 23, -8.084029967312e-01, 2.156962731931e-04, 3.3875e+01, 8.7363e-01,
WDIAGNOSTIC, 24, -8.087539381860e-01, 1.872314616134e-04, 3.4759e+01, 8.8393e-01,
WDIAGNOSTIC, 25, -8.091845872457e-01, 1.635418239278e-04, 3.5666e+01, 9.0706e-01,
WDIAGNOSTIC, 26, -8.095739608328e-01, 1.437545021658e-04, 3.6539e+01, 8.7296e-01,
WDIAGNOSTIC, 27, -8.097974694316e-01, 1.251539448682e-04, 3.7418e+01, 8.7917e-01,
WDIAGNOSTIC, 28, -8.099678403527e-01, 1.066927639434e-04, 3.8305e+01, 8.8722e-01,
WDIAGNOSTIC, 29, -8.101935762963e-01, 8.978529453776e-05, 3.9220e+01, 9.1483e-01,
WDIAGNOSTIC, 30, -8.103602769553e-01, 7.575727462081e-05, 4.0140e+01, 9.1991e-01,
WDIAGNOSTIC, 31, -8.104553431146e-01, 6.329303514731e-05, 4.1038e+01, 8.9754e-01,
WDIAGNOSTIC, 32, -8.106493964653e-01, 5.423259377901e-05, 4.1916e+01, 8.7833e-01,
WDIAGNOSTIC, 33, -8.106557141115e-01, 4.422748606051e-05, 4.2793e+01, 8.7665e-01,
WDIAGNOSTIC, 34, -8.106511401274e-01, 3.419112563673e-05, 4.3704e+01, 9.1118e-01,
WDIAGNOSTIC, 35, -8.107653344432e-01, 2.695630713010e-05, 4.4590e+01, 8.8636e-01,
WDIAGNOSTIC, 36, -8.108188968806e-01, 2.187176057098e-05, 4.5505e+01, 9.1464e-01,
WDIAGNOSTIC, 37, -8.108232996195e-01, 1.714638997002e-05, 4.6404e+01, 8.9933e-01,
WDIAGNOSTIC, 38, -8.108057499749e-01, 1.246265634034e-05, 4.7282e+01, 8.7734e-01,
WDIAGNOSTIC, 39, -8.107511603521e-01, 8.404178680942e-06, 4.8156e+01, 8.7409e-01,
WDIAGNOSTIC, 40, -8.107411304122e-01, 5.137766230769e-06, 4.9038e+01, 8.8245e-01,
WDIAGNOSTIC, 41, -8.106956188368e-01, 1.914029310726e-06, 4.9925e+01, 8.8734e-01,
WDIAGNOSTIC, 42, -8.106148688378e-01, -3.588547017597e-07, 5.0828e+01, 9.0291e-01,
Current level = 3 of 4
number of iterations = 50
shrink factors = [2, 2, 2]
smoothing sigmas = 1.0000e+00 vox
required fixed parameters = [91, 109, 91, -89.5, 125.5, -71.5, 2, 2, 2, 1, 0, 0, 0, -1, 0, 0, 0, 1]
XDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
WDIAGNOSTIC, 1, -8.254524930297e-01, 1.797693134862e+308, 5.8316e+01, 7.4881e+00,
WDIAGNOSTIC, 2, -8.271440202857e-01, 1.797693134862e+308, 6.4644e+01, 6.3276e+00,
WDIAGNOSTIC, 3, -8.291818601772e-01, 1.797693134862e+308, 7.1016e+01, 6.3716e+00,
WDIAGNOSTIC, 4, -8.310663360106e-01, 1.797693134862e+308, 7.7363e+01, 6.3472e+00,
WDIAGNOSTIC, 5, -8.328685915056e-01, 1.797693134862e+308, 8.3689e+01, 6.3264e+00,
WDIAGNOSTIC, 6, -8.345501120066e-01, 1.797693134862e+308, 8.9965e+01, 6.2758e+00,
WDIAGNOSTIC, 7, -8.360489253918e-01, 1.797693134862e+308, 9.6313e+01, 6.3482e+00,
WDIAGNOSTIC, 8, -8.374133556764e-01, 1.797693134862e+308, 1.0266e+02, 6.3453e+00,
WDIAGNOSTIC, 9, -8.386802132123e-01, 1.797693134862e+308, 1.0908e+02, 6.4217e+00,
WDIAGNOSTIC, 10, -8.398920856294e-01, 1.122611395519e-03, 1.1548e+02, 6.3990e+00,
WDIAGNOSTIC, 11, -8.410597081234e-01, 9.603956566840e-04, 1.2183e+02, 6.3484e+00,
WDIAGNOSTIC, 12, -8.421831593850e-01, 8.180347431815e-04, 1.2812e+02, 6.2893e+00,
WDIAGNOSTIC, 13, -8.432580487105e-01, 7.044274123090e-04, 1.3450e+02, 6.3879e+00,
WDIAGNOSTIC, 14, -8.442026206026e-01, 6.110625730097e-04, 1.4080e+02, 6.2949e+00,
WDIAGNOSTIC, 15, -8.450388868869e-01, 5.335137917391e-04, 1.4729e+02, 6.4919e+00,
WDIAGNOSTIC, 16, -8.457367170852e-01, 4.667253037059e-04, 1.5366e+02, 6.3714e+00,
WDIAGNOSTIC, 17, -8.463768167524e-01, 4.071060328244e-04, 1.6015e+02, 6.4838e+00,
WDIAGNOSTIC, 18, -8.468993108669e-01, 3.516768789485e-04, 1.6642e+02, 6.2771e+00,
WDIAGNOSTIC, 19, -8.473639735076e-01, 3.000843953057e-04, 1.7279e+02, 6.3613e+00,
WDIAGNOSTIC, 20, -8.477838777484e-01, 2.531531040796e-04, 1.7917e+02, 6.3886e+00,
WDIAGNOSTIC, 21, -8.481648435135e-01, 2.118345444264e-04, 1.8556e+02, 6.3835e+00,
WDIAGNOSTIC, 22, -8.484945180769e-01, 1.766043046207e-04, 1.9198e+02, 6.4234e+00,
WDIAGNOSTIC, 23, -8.488174270892e-01, 1.482759495936e-04, 1.9834e+02, 6.3564e+00,
WDIAGNOSTIC, 24, -8.491111129889e-01, 1.256746494572e-04, 2.0488e+02, 6.5409e+00,
WDIAGNOSTIC, 25, -8.493920570818e-01, 1.080394746984e-04, 2.1160e+02, 6.7217e+00,
WDIAGNOSTIC, 26, -8.496632422145e-01, 9.405079338617e-05, 2.1795e+02, 6.3456e+00,
WDIAGNOSTIC, 27, -8.499005703894e-01, 8.310976104373e-05, 2.2431e+02, 6.3630e+00,
WDIAGNOSTIC, 28, -8.501213245293e-01, 7.398820744416e-05, 2.3072e+02, 6.4068e+00,
WDIAGNOSTIC, 29, -8.503369038027e-01, 6.634679611450e-05, 2.3712e+02, 6.4059e+00,
WDIAGNOSTIC, 30, -8.505702428371e-01, 6.021319301225e-05, 2.4344e+02, 6.3232e+00,
WDIAGNOSTIC, 31, -8.508229788584e-01, 5.560131351919e-05, 2.4979e+02, 6.3487e+00,
WDIAGNOSTIC, 32, -8.510332075172e-01, 5.162910861196e-05, 2.5618e+02, 6.3837e+00,
WDIAGNOSTIC, 33, -8.512591540825e-01, 4.856723619606e-05, 2.6262e+02, 6.4452e+00,
WDIAGNOSTIC, 34, -8.514919234180e-01, 4.624484709519e-05, 2.6913e+02, 6.5041e+00,
WDIAGNOSTIC, 35, -8.516728539798e-01, 4.404631006546e-05, 2.7549e+02, 6.3596e+00,
WDIAGNOSTIC, 36, -8.518927314653e-01, 4.233774731277e-05, 2.8187e+02, 6.3865e+00,
WDIAGNOSTIC, 37, -8.521240988392e-01, 4.091753180960e-05, 2.8826e+02, 6.3918e+00,
WDIAGNOSTIC, 38, -8.523469427743e-01, 3.956431783670e-05, 2.9460e+02, 6.3397e+00,
WDIAGNOSTIC, 39, -8.525581328075e-01, 3.815374212134e-05, 3.0102e+02, 6.4195e+00,
WDIAGNOSTIC, 40, -8.527624507681e-01, 3.682120160997e-05, 3.0736e+02, 6.3335e+00,
WDIAGNOSTIC, 41, -8.530047797554e-01, 3.607475902256e-05, 3.1383e+02, 6.4719e+00,
WDIAGNOSTIC, 42, -8.532446348761e-01, 3.547370417845e-05, 3.2023e+02, 6.4057e+00,
WDIAGNOSTIC, 43, -8.534643431411e-01, 3.495074344054e-05, 3.2672e+02, 6.4811e+00,
WDIAGNOSTIC, 44, -8.536713657969e-01, 3.445337158786e-05, 3.3311e+02, 6.3994e+00,
WDIAGNOSTIC, 45, -8.538736381128e-01, 3.352059258878e-05, 3.3943e+02, 6.3186e+00,
WDIAGNOSTIC, 46, -8.540668990877e-01, 3.240351867933e-05, 3.4581e+02, 6.3753e+00,
WDIAGNOSTIC, 47, -8.542299340117e-01, 3.101639732365e-05, 3.5219e+02, 6.3805e+00,
WDIAGNOSTIC, 48, -8.544112326109e-01, 2.952422260145e-05, 3.5850e+02, 6.3124e+00,
WDIAGNOSTIC, 49, -8.545995655242e-01, 2.798153485686e-05, 3.6488e+02, 6.3825e+00,
WDIAGNOSTIC, 50, -8.547830074586e-01, 2.639017336151e-05, 3.7128e+02, 6.3995e+00,
Current level = 4 of 4
number of iterations = 20
shrink factors = [1, 1, 1]
smoothing sigmas = 0.0000e+00 vox
required fixed parameters = [182, 218, 182, -90, 126, -72, 1, 1, 1, 1, 0, 0, 0, -1, 0, 0, 0, 1]
XDIAGNOSTIC,Iteration,metricValue,convergenceValue,ITERATION_TIME_INDEX,SINCE_LAST
WDIAGNOSTIC, 1, -8.629684084058e-01, 1.797693134862e+308, 4.2460e+02, 5.3306e+01,
WDIAGNOSTIC, 2, -8.643027462962e-01, 1.797693134862e+308, 4.7860e+02, 5.4000e+01,
WDIAGNOSTIC, 3, -8.657988355672e-01, 1.797693134862e+308, 5.3107e+02, 5.2470e+01,
WDIAGNOSTIC, 4, -8.671380259551e-01, 1.797693134862e+308, 5.8455e+02, 5.3486e+01,
WDIAGNOSTIC, 5, -8.683649332121e-01, 1.797693134862e+308, 6.3768e+02, 5.3130e+01,
WDIAGNOSTIC, 6, -8.694751760729e-01, 1.797693134862e+308, 6.9047e+02, 5.2782e+01,
WDIAGNOSTIC, 7, -8.704964622880e-01, 1.797693134862e+308, 7.4325e+02, 5.2783e+01,
WDIAGNOSTIC, 8, -8.714456104943e-01, 1.797693134862e+308, 7.9637e+02, 5.3119e+01,
WDIAGNOSTIC, 9, -8.723368589923e-01, 1.797693134862e+308, 8.4966e+02, 5.3294e+01,
WDIAGNOSTIC, 10, -8.732077762028e-01, 7.521381350736e-04, 9.0310e+02, 5.3439e+01,
WDIAGNOSTIC, 11, -8.740660652078e-01, 6.393356191088e-04, 9.5570e+02, 5.2599e+01,
WDIAGNOSTIC, 12, -8.749568552338e-01, 5.478799309718e-04, 1.0094e+03, 5.3670e+01,
WDIAGNOSTIC, 13, -8.758422844382e-01, 4.802240059706e-04, 1.0620e+03, 5.2674e+01,
WDIAGNOSTIC, 14, -8.767362375139e-01, 4.301284816257e-04, 1.1160e+03, 5.3936e+01,
WDIAGNOSTIC, 15, -8.776336798073e-01, 3.931621778037e-04, 1.1696e+03, 5.3655e+01,
WDIAGNOSTIC, 16, -8.785285883767e-01, 3.651800232320e-04, 1.2232e+03, 5.3550e+01,
WDIAGNOSTIC, 17, -8.793879497702e-01, 3.425142021480e-04, 1.2760e+03, 5.2851e+01,
WDIAGNOSTIC, 18, -8.802080111855e-01, 3.223912193662e-04, 1.3286e+03, 5.2536e+01,
WDIAGNOSTIC, 19, -8.809854655319e-01, 3.027984535805e-04, 1.3812e+03, 5.2665e+01,
WDIAGNOSTIC, 20, -8.817130934347e-01, 2.827587968901e-04, 1.4345e+03, 5.3290e+01,
Elapsed time (stage 0): 1.4373e+03
Total elapsed time: 1.4373e+03
Exception Object caught:
itk::ExceptionObject (0x32721e0)
Location: "unknown"
File: /SCR/software/ants-build/ITKv4-install/include/ITK-4.6/itkImageToImageFilter.hxx
Line: 248
Description: itk::ERROR: ImageToImageFilter(0x2f724a0): Inputs do not occupy the same physical space!
InputImage Origin: [-8.7500000e+01, 1.2350000e+02, -6.9500000e+01], InputImage_1 Origin: [-9.0000000e+01, 1.2600000e+02, -7.2000000e+01]
Tolerance: 4.0000000e-06
InputImage Spacing: [4.0000000e+00, 4.0000000e+00, 4.0000000e+00], InputImage_1 Spacing: [1.0000000e+00, 1.0000000e+00, 1.0000000e+00]
Tolerance: 4.0000000e-06
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ntustison
commented on May 28, 2024
This was a common occurrence for me both inside and outside the registration framework (using B-spline SyN and original SyN) on my university's linux cluster. The same operations on the same data would not reproduce the exception on my Mac Pro. The exception thrown is in the ImageToImageFilter but there is also a related check in DisplacementFieldTransform which was also a constant problem for me. Finally, I simply changed the tolerance values in both places from 1e-6 to 1e-2 and haven't had an issue since. I couldn't think of an alternative solution (outside of unifying such tolerance values into a CMake variable) since these tolerance values are buried pretty deep.
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chrisgorgo
commented on May 28, 2024
For me the problem was the initial transformation. When I estimated it using floats and used it as init without floats I got the error
from ants.
stnava
commented on May 28, 2024
Moving comments to: #74
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