Comments (4)
just use
ImageMath 3 non_lesion.nii.gz Neg lesion.nii.gz
ImageMath 3 non_lesion.nii.gz ME non_lesion.nii.gz 2
standard antsRegistration call but add
-x non_lesion.nii.gz
also --- use the moving image as the fixed image .... then apply inverse
mappings
brian
On Fri, Oct 18, 2013 at 2:09 PM, Satrajit Ghosh [email protected]:
is there an example of running antsRegistration with a moving image that
has a lesion to a fixed image that is an intact brain? we do have a binary
mask of the lesion and both images are brain only.—
Reply to this email directly or view it on GitHubhttps://github.com//issues/48
.
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@stnava - thanks - but can -x take only mask? according to the help it needs two.
also --- use the moving image as the fixed image .... then apply inverse mappings
just to clarify, are you saying i should register the intact brain to the lesioned brain as opposed to the other way around?
from ants.
Yes to both questions
On Oct 18, 2013 4:58 PM, "Satrajit Ghosh" [email protected] wrote:
@stnava https://github.com/stnava - thanks - but can -x take only mask?
according to the help it needs two.also --- use the moving image as the fixed image .... then apply inverse
mappingsjust to clarify, are you saying i should register the intact brain to the
lesioned brain as opposed to the other way around?—
Reply to this email directly or view it on GitHubhttps://github.com//issues/48#issuecomment-26629180
.
from ants.
thanks brian, this worked reasonably well. closing.
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