Name: Anurag Raj
Type: User
Company: CSIR-Institute of Genomics and Integrative Biology
Bio: PhD in Bioinformatics / Compuational Proteomics @ddlab-igib
Twitter: anuragraj_
Location: New Delhi, India
Blog: https://anuragraj.github.io/
Anurag Raj's Projects
A R-package for meta data query of PRIDE database
Tools for Batch Effects Diagnostics and Correction
protein markers selection
Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce redundancy of peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).
Library for Proteomics research literatures, tools and databases.
This is the package of GuanLab's winning algorithm in the NCI-CPTAC DREAM Proteogenomics Challenge
Proteome Generator
The Proteomics Experimental Design file format: Standard for experimental design annotation
proteoQC: an R package for proteomics data quality assessment.
Proteomics Toolset for Integrative Data Analysis
A Perl parser for the ProtXML file type.
Multi-threaded, parallel tandem execution wrapper.
Introduction to R
Short R codes for practice
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
PRIDE api for R
Analyse citation data from Google Scholar
Software solution for common top-down proteomics tasks
SE PSM assignment software
Graphical user interface for proteomics identification search engines
Shell scripts for various purpose
Website hosted at https://sib-swiss.github.io/single-cell-training/latest/
Python package for efficient MS/MS spectrum processing and visualization
For testing git pages themes
Thermo RAW file parser that runs on Linux with mono
Code snippets for weekly #tidytuesday project
Repository for study on PTR across human Tissues (Slavov et al. 2015)