All documentation associated with bioinformatics tutorial on the Alpine cluster.
With this repository, HPC Anschutz users will fine shorts and concise documentation on bioinformatics Alpine related topics. This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
This repository is composed of two blocks: (1) An FAQ block, (2) An Alpine pipeline optimization FAQ and (3) A Quickbytes tutorial block.
- For questions regarding Alpine maintenance please visit here.
- For questions regarding Alpine maintenance please visit here.
Quickbytes that are designed for package installation and pipeline optimization.
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R packages installation:
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MATLAB installation in Juputerlab:
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Deep learning applications installation on Alpine:
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Guide to use mamba instead of anaconda on Alpine:
Workshops given to customized to labs that have been already given. Send an email to [email protected] to request a workshop.
- List of workshops:
- NVIDIA Mark IIII Sys workshop series (05/04/23 to 06/22/23). Additional information can be found here.
- Introduction to the Shell - Barocas lab
- Introduction to Slurm - Barocas lab
- Introduction to Alpine - Kalpathy-Cramer lab
- Introduction to Slurm and Petalibrary - Lange lab
- GPU partitions on Alpine Janani lab 090623
- Alpine entry level workshop 090723
- Immuno 6110 class 090723
- Intro to spack part 1 10/17/23
- Intro to Horovod part 1 10/24/23
- Alpine entry level workshop 110223
- Intro to GPU computing part 1 112823
- Intro to GPU computing part 2 113023
- Intro to GPU computing part 3 120423