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My research focuses on the intersection of genetics, genomics, and plant pathology, specifically emphasising plant-pathogen interactions within the Brassica napus-Leptosphaeria maculans and B. napus-Verticillium longisporum pathosystems. I employ a multidisciplinary approach, combining my expertise in plant pathology with advanced bioinformatics and computational biology techniques. One of my work's key aspects involves identifying and diagnosing fungal pathogens affecting plant materials in field and laboratory settings. By leveraging my extensive plant pathology knowledge and cutting-edge molecular techniques, I contribute to developing, analysing, and visualising genomic data related to these plant-pathogen interactions. This profile provides Basic to Pro Python, R and SAS codes with plant genetics, genomics and agricultural-based examples and Statistical, Artificial Intelligence and Machine Learning programming.

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circular-barplot icon circular-barplot

A circular barplot is a plot where each bar is displayed along a circle instead of a line.

combo-chart icon combo-chart

A combo chart is a combination of two column charts, two line graphs, or a column chart and a line graph.

comparing-different-knn-models-parameters icon comparing-different-knn-models-parameters

In addition to linear regression, it's possible to fit the same data using k-Nearest Neighbors. When you perform a prediction on a new sample, this model either takes the weighted or un-weighted average of the neighbors. In order to see the difference between those two averaging options, we train a kNN model with both of those parameters

contigs-l50 icon contigs-l50

In the context of genomics, L50 is a metric used to assess the quality of an assembly or sequencing data. It is a statistical measure that represents the minimum number of contigs or reads required to cover at least 50% of the total assembly or sequencing length.

contigs-n50 icon contigs-n50

In the context of contigs and sequencing, N50 is a metric used to assess the quality of an assembly or sequencing data. It is a statistical measure that represents the contig or read length at which at least 50% of the total assembly length is contained in contigs or reads of that length or longer.

correlation icon correlation

Correlation is a statistical measure (expressed as a number) that describes the size and direction of a relationship between two or more variables.

correlation-analysis icon correlation-analysis

In statistics, correlation or dependence is any statistical relationship, whether causal or not, between two random variables or bivariate data.

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