arianemora Goto Github PK

deeptreeattention

Implementation of Hang et al. 2020 "Hyperspectral Image Classification with Attention Aided CNNs" for tree species prediction

deps

Dependencies as built packages when the authors didn't build packages so I can deploy to pip

evaluation-of-integration-tools

Scripts and data for evalution of integration tools

foxa2_kirp_kirc

grasp-docker

kirp_pe2

Repository for analysis of HIRA expression in KIRP

master-research-project

University of Queensland Master of Bioinformatics Research Project Semester 1 2021

momix-notebook

mouse_aging_epigenomics_2018

mousecns_vae

Results and code from the manuscript: Deep Learning Identifies Multi-layered Roles of Polycomb Repressor Complex 2 During Mouse CNS Development

msa

Modular BioJS compoment for a multiple sequence alignment

phylotree.js

Interactive viewer of phylogenetic trees

public

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

pytorch-topological-playground

Testing various extenstions to topological machine learning framework based on PyTorch

regrcpqn

scibacr

RNA modification detection in bacteria

scibiomart

A wrapper around biomart for python based on the biomart API

scidat

scidat a package for downloading and annotating data from TCGA

scidmg

Consolidates differentially methylated regions and differentially methylated cytosines at the gene level.

sciepi2gene

Sci-epi2gene maps events annotated to a genome location to nearby genes.

scimotf

Performs a FET to find motifs enriched in clusters of genes.

scircm

scirnap

Simple wrapper for running common scripts with consistent logging.

scitemplate

Template for making a python package

sciutil

Utility functions for all the sci applications

scivae

VAE package for reproducible generative models of biological data

sciviso

A wrapper to plot chats in a consistent manner

similarnodefinder

sircler

R package for SiRCle