arianemora/scircm

scircm's Issues

R crashes when using virtual environment : scircm

Hi Ariane,
I am trying to use the script in Mac, I have followed the instructions but when I want to use the virtual environment R studio crashes. I have installed Phyton, Rtools and all required packages.

Thanks for your help

install.packages("reticulate), Create a new environment and install scircm.

virtualenv_create(
envname = "ml",
python = NULL,
packages = "scircm",
system_site_packages = getOption("reticulate.virtualenv.system_site_packages",
default = FALSE))

## Install the R package

```{r}
#install.packages("devtools")
library(devtools)
#install_github("ArianeMora/SiRCleR")
library(sircle)

library(tidyverse)
library(dplyr)
library(reticulate)
library(readxl)

use_virtualenv("ml", required = TRUE)
scirm<<-import("scircm")

-------> HERE IT CRASHES

prot_file <- read.csv ("Data/AffectedvsWT_prot.csv")
rna_file  <- read.csv ("Data/AffectedvsWT_RNA.csv")
meth_file <- read.csv ("Data/AffectedvsWT_meth.csv")