No protein sequence for Cyc2

[arkadiy-garber]

No protein sequence for Cyc2

[sheaster]

Hi I also have this issue - seeing "EMPTY" for protein_sequence for cyc2.

edit: looking a little deeper in issues i found this: #45 (comment)

i'll just parse the HMM_results. thanks!

[Arkadiy-Garber]

Hi Shea and Eva,

Thanks for your interest in FeGenie, and apologies for this bug/issue.

Shea correctly identified a similar issue in a different issue thread: #45 (comment)

This is a bug that is slated to be fixed sometime within the next few weeks. In the meantime, please consider that Cyc2 identification as correct. FeGenie has an issue fetching the protein sequence for that from the raw output files, but you can find that sequence in the protein predictions (InputSeq.fa-proteins.faa) if you use the locus tag assigned to Cyc2 in the FeGenie summary CSV file.

Thanks,
Arkadiy