armaneshaghi Goto Github PK

hybrid-fortran

Performance Portable Parallel Programming - Target CUDA and OpenMP in a Unified Codebase

ipynb_base16_dark

IPython Notebook Theme. Base16 default colors, VIM mode by default

ipython_nb_cluster

Scripts to launch IPython parallel on a cluster and run an IPython Notebook to run the analysis.

istn

Image-and-Spatial Transformer Networks

itk

Insight Segmentation and Registration Toolkit -- Mirror

itktools

Practical command line tools based on the ITK

knitr

A general-purpose tool for dynamic report generation in R

kwyk

Knowing what you know - Bayesian brain parcellation

lab2im

Library for generating images by sampling a GMM conditioned on label maps

lesionfilling_example

A reproducible example on how to use ANTs' lesion filling program

magrittr

R package to bring forward-piping features ala F#'s |> operator. Ceci n'est pas une pipe.

medical-image-analysis-ipython-tutorials

miscellaneous

Useful scripts

monai

AI Toolkit for Healthcare Imaging

mri-contrast

Deep learning algorithm to automate brain MRI contrast identification process

neurobattery

Using ANTs to process multiple MR image types for a single subject

neurohackweek.github.io

nifti2jpg

Ranger's plugin to view MRI files without opening

nilearn

Machine learning for NeuroImaging in Python

nipy-notebooks

Example notebooks for basic tasks in neuroimaging and statistcs with nipy

nipype

Workflows and interfaces for neuroimaging packages

nipype_codes_ipmsa

nipype_concepts

Tutorial notebooks for Nipype

nmo_mvpa

NMO MVPA project

nmoms_machinelearning

openmc

OpenMC Monte Carlo Code

phinet

Classifying modalities in magnetic resonance brain imaging

pizarro-et-al-2018-dl-identifies-mri-contrasts

predpy

Predicting disability from MRI scans in people with MS

profilelife