Giter Site home page Giter Site logo

lnpy's People

Contributors

arnefmeyer avatar arnefreerk avatar juleslebert avatar

Stargazers

avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar avatar

Watchers

avatar avatar avatar

Forkers

atencra neuralsignal alexfang0214sh juleslebert mariosakritas jenlindenlab zhenzonglei

lnpy's Issues

Build issues with conda on linux64

Environment:

  • Arch Linux machine (5.10.16-arch1-1)
  • Conda 4.9.2

Code Snippet:

git clone https://github.com/arnefmeyer/lnpy.git
conda create -n lnpy_test python=3.7 numpy scipy cython matplotlib libgcc gcc_linux-64 gxx_linux-64
conda activate lnpy_test
cd lnpy
mv /tmp/1/gammatone/Gfb_analyze* ./lnpy/transform/src/gammatone  # files already downloaded and unzipped into /tmp/1
python setup.py build

Error/Trace

running build
running config_cc
unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
build_src
building extension "lnpy.transform.wrap_gtfb" sources
building extension "lnpy.multilinear.context.context_fast" sources
building extension "lnpy.learn.pyhelper" sources
building extension "lnpy.fast_tools" sources
build_src: building npy-pkg config files
running build_py
creating build
creating build/lib.linux-x86_64-3.7
creating build/lib.linux-x86_64-3.7/lnpy
copying lnpy/util.py -> build/lib.linux-x86_64-3.7/lnpy
copying lnpy/job.py -> build/lib.linux-x86_64-3.7/lnpy
copying lnpy/setup.py -> build/lib.linux-x86_64-3.7/lnpy
copying lnpy/simulate.py -> build/lib.linux-x86_64-3.7/lnpy
copying lnpy/__init__.py -> build/lib.linux-x86_64-3.7/lnpy
copying lnpy/plotting.py -> build/lib.linux-x86_64-3.7/lnpy
copying lnpy/base.py -> build/lib.linux-x86_64-3.7/lnpy
copying lnpy/metrics.py -> build/lib.linux-x86_64-3.7/lnpy
creating build/lib.linux-x86_64-3.7/lnpy/multilinear
copying lnpy/multilinear/util.py -> build/lib.linux-x86_64-3.7/lnpy/multilinear
copying lnpy/multilinear/setup.py -> build/lib.linux-x86_64-3.7/lnpy/multilinear
copying lnpy/multilinear/__init__.py -> build/lib.linux-x86_64-3.7/lnpy/multilinear
creating build/lib.linux-x86_64-3.7/lnpy/learn
copying lnpy/learn/sgd.py -> build/lib.linux-x86_64-3.7/lnpy/learn
copying lnpy/learn/setup.py -> build/lib.linux-x86_64-3.7/lnpy/learn
copying lnpy/learn/svm.py -> build/lib.linux-x86_64-3.7/lnpy/learn
copying lnpy/learn/glm.py -> build/lib.linux-x86_64-3.7/lnpy/learn
copying lnpy/learn/grid_search.py -> build/lib.linux-x86_64-3.7/lnpy/learn
copying lnpy/learn/__init__.py -> build/lib.linux-x86_64-3.7/lnpy/learn
copying lnpy/learn/base.py -> build/lib.linux-x86_64-3.7/lnpy/learn
creating build/lib.linux-x86_64-3.7/lnpy/lnb
copying lnpy/lnb/cbrf.py -> build/lib.linux-x86_64-3.7/lnpy/lnb
copying lnpy/lnb/__init__.py -> build/lib.linux-x86_64-3.7/lnpy/lnb
copying lnpy/lnb/base.py -> build/lib.linux-x86_64-3.7/lnpy/lnb
creating build/lib.linux-x86_64-3.7/lnpy/lnp
copying lnpy/lnp/setup.py -> build/lib.linux-x86_64-3.7/lnpy/lnp
copying lnpy/lnp/sta.py -> build/lib.linux-x86_64-3.7/lnpy/lnp
copying lnpy/lnp/glm.py -> build/lib.linux-x86_64-3.7/lnpy/lnp
copying lnpy/lnp/mid.py -> build/lib.linux-x86_64-3.7/lnpy/lnp
copying lnpy/lnp/__init__.py -> build/lib.linux-x86_64-3.7/lnpy/lnp
copying lnpy/lnp/base.py -> build/lib.linux-x86_64-3.7/lnpy/lnp
creating build/lib.linux-x86_64-3.7/lnpy/transform
copying lnpy/transform/modspec.py -> build/lib.linux-x86_64-3.7/lnpy/transform
copying lnpy/transform/setup.py -> build/lib.linux-x86_64-3.7/lnpy/transform
copying lnpy/transform/gammatone.py -> build/lib.linux-x86_64-3.7/lnpy/transform
copying lnpy/transform/__init__.py -> build/lib.linux-x86_64-3.7/lnpy/transform
copying lnpy/transform/gabor.py -> build/lib.linux-x86_64-3.7/lnpy/transform
copying lnpy/transform/base.py -> build/lib.linux-x86_64-3.7/lnpy/transform
copying lnpy/transform/spectrogram.py -> build/lib.linux-x86_64-3.7/lnpy/transform
creating build/lib.linux-x86_64-3.7/lnpy/linear
copying lnpy/linear/sta.py -> build/lib.linux-x86_64-3.7/lnpy/linear
copying lnpy/linear/ridge.py -> build/lib.linux-x86_64-3.7/lnpy/linear
copying lnpy/linear/prior.py -> build/lib.linux-x86_64-3.7/lnpy/linear
copying lnpy/linear/asd.py -> build/lib.linux-x86_64-3.7/lnpy/linear
copying lnpy/linear/__init__.py -> build/lib.linux-x86_64-3.7/lnpy/linear
copying lnpy/linear/ald.py -> build/lib.linux-x86_64-3.7/lnpy/linear
copying lnpy/linear/ard.py -> build/lib.linux-x86_64-3.7/lnpy/linear
copying lnpy/linear/base.py -> build/lib.linux-x86_64-3.7/lnpy/linear
creating build/lib.linux-x86_64-3.7/lnpy/io
copying lnpy/io/hdf.py -> build/lib.linux-x86_64-3.7/lnpy/io
copying lnpy/io/__init__.py -> build/lib.linux-x86_64-3.7/lnpy/io
creating build/lib.linux-x86_64-3.7/lnpy/multilinear/context
copying lnpy/multilinear/context/setup.py -> build/lib.linux-x86_64-3.7/lnpy/multilinear/context
copying lnpy/multilinear/context/context.py -> build/lib.linux-x86_64-3.7/lnpy/multilinear/context
copying lnpy/multilinear/context/__init__.py -> build/lib.linux-x86_64-3.7/lnpy/multilinear/context
copying lnpy/multilinear/context/vb_dense.py -> build/lib.linux-x86_64-3.7/lnpy/multilinear/context
copying lnpy/multilinear/context/als_dense.py -> build/lib.linux-x86_64-3.7/lnpy/multilinear/context
running build_ext
customize UnixCCompiler
C compiler: /home/ajay/miniconda3/envs/lnpy_test/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/ajay/miniconda3/envs/lnpy_test/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/ajay/miniconda3/envs/lnpy_test/include -fPIC

creating /tmp/tmplpkmrowm/tmp
creating /tmp/tmplpkmrowm/tmp/tmplpkmrowm
compile options: '-MMD -MF /tmp/tmplpkmrowm/file.c.d -c'
x86_64-conda_cos6-linux-gnu-cc: /tmp/tmplpkmrowm/file.c
customize UnixCCompiler using build_ext
customize UnixCCompiler
C compiler: /home/ajay/miniconda3/envs/lnpy_test/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/ajay/miniconda3/envs/lnpy_test/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/ajay/miniconda3/envs/lnpy_test/include -fPIC

creating /tmp/tmpszjy380f/tmp
creating /tmp/tmpszjy380f/tmp/tmpszjy380f
compile options: '-MMD -MF /tmp/tmpszjy380f/file.c.d -c'
x86_64-conda_cos6-linux-gnu-cc: /tmp/tmpszjy380f/file.c
customize UnixCCompiler using build_ext
building 'lnpy.transform.wrap_gtfb' extension
compiling C sources
C compiler: /home/ajay/miniconda3/envs/lnpy_test/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/ajay/miniconda3/envs/lnpy_test/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/ajay/miniconda3/envs/lnpy_test/include -fPIC

creating build/temp.linux-x86_64-3.7/lnpy
creating build/temp.linux-x86_64-3.7/lnpy/transform
creating build/temp.linux-x86_64-3.7/lnpy/transform/src
creating build/temp.linux-x86_64-3.7/lnpy/transform/src/gammatone
compile options: '-Ilnpy/transform/src/gammatone -I/home/ajay/miniconda3/envs/lnpy_test/lib/python3.7/site-packages/numpy/core/include -I/home/ajay/miniconda3/envs/lnpy_test/lib/python3.7/site-packages/numpy/core/include -I/home/ajay/miniconda3/envs/lnpy_test/include/python3.7m -c'
x86_64-conda_cos6-linux-gnu-cc: lnpy/transform/wrap_gtfb.c
x86_64-conda_cos6-linux-gnu-cc: lnpy/transform/src/gammatone/Gfb_analyze.c
In file included from lnpy/transform/src/gammatone/Gfb_analyze.c:36:0:
lnpy/transform/src/gammatone/Gfb_analyze.h:99:3: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   void release_tables();
   ^~~~
lnpy/transform/src/gammatone/Gfb_analyze.c:135:6: warning: function declaration isn't a prototype [-Wstrict-prototypes]
 void release_tables()
      ^~~~~~~~~~~~~~
In file included from lnpy/transform/wrap_gtfb.c:432:0:
lnpy/transform/src/gammatone/Gfb_analyze.h:99:3: warning: function declaration isn't a prototype [-Wstrict-prototypes]
   void release_tables();
   ^~~~
In file included from /home/ajay/miniconda3/envs/lnpy_test/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:0,
                 from /home/ajay/miniconda3/envs/lnpy_test/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                 from /home/ajay/miniconda3/envs/lnpy_test/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                 from lnpy/transform/wrap_gtfb.c:436:
/home/ajay/miniconda3/envs/lnpy_test/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
 #warning "Using deprecated NumPy API, disable it with " \
  ^~~~~~~
lnpy/transform/wrap_gtfb.c: In function '__Pyx__ExceptionSave':
lnpy/transform/wrap_gtfb.c:5862:21: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_type'; did you mean 'curexc_type'?
     *type = tstate->exc_type;
                     ^~~~~~~~
                     curexc_type
lnpy/transform/wrap_gtfb.c:5863:22: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_value'; did you mean 'curexc_value'?
     *value = tstate->exc_value;
                      ^~~~~~~~~
                      curexc_value
lnpy/transform/wrap_gtfb.c:5864:19: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_traceback'; did you mean 'curexc_traceback'?
     *tb = tstate->exc_traceback;
                   ^~~~~~~~~~~~~
                   curexc_traceback
lnpy/transform/wrap_gtfb.c: In function '__Pyx__ExceptionReset':
lnpy/transform/wrap_gtfb.c:5871:24: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_type'; did you mean 'curexc_type'?
     tmp_type = tstate->exc_type;
                        ^~~~~~~~
                        curexc_type
lnpy/transform/wrap_gtfb.c:5872:25: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_value'; did you mean 'curexc_value'?
     tmp_value = tstate->exc_value;
                         ^~~~~~~~~
                         curexc_value
lnpy/transform/wrap_gtfb.c:5873:22: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_traceback'; did you mean 'curexc_traceback'?
     tmp_tb = tstate->exc_traceback;
                      ^~~~~~~~~~~~~
                      curexc_traceback
lnpy/transform/wrap_gtfb.c:5874:13: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_type'; did you mean 'curexc_type'?
     tstate->exc_type = type;
             ^~~~~~~~
             curexc_type
lnpy/transform/wrap_gtfb.c:5875:13: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_value'; did you mean 'curexc_value'?
     tstate->exc_value = value;
             ^~~~~~~~~
             curexc_value
lnpy/transform/wrap_gtfb.c:5876:13: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_traceback'; did you mean 'curexc_traceback'?
     tstate->exc_traceback = tb;
             ^~~~~~~~~~~~~
             curexc_traceback
lnpy/transform/wrap_gtfb.c: In function '__Pyx__GetException':
lnpy/transform/wrap_gtfb.c:5931:24: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_type'; did you mean 'curexc_type'?
     tmp_type = tstate->exc_type;
                        ^~~~~~~~
                        curexc_type
lnpy/transform/wrap_gtfb.c:5932:25: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_value'; did you mean 'curexc_value'?
     tmp_value = tstate->exc_value;
                         ^~~~~~~~~
                         curexc_value
lnpy/transform/wrap_gtfb.c:5933:22: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_traceback'; did you mean 'curexc_traceback'?
     tmp_tb = tstate->exc_traceback;
                      ^~~~~~~~~~~~~
                      curexc_traceback
lnpy/transform/wrap_gtfb.c:5934:13: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_type'; did you mean 'curexc_type'?
     tstate->exc_type = local_type;
             ^~~~~~~~
             curexc_type
lnpy/transform/wrap_gtfb.c:5935:13: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_value'; did you mean 'curexc_value'?
     tstate->exc_value = local_value;
             ^~~~~~~~~
             curexc_value
lnpy/transform/wrap_gtfb.c:5936:13: error: 'PyThreadState {aka struct _ts}' has no member named 'exc_traceback'; did you mean 'curexc_traceback'?
     tstate->exc_traceback = local_tb;
             ^~~~~~~~~~~~~
             curexc_traceback
error: Command "/home/ajay/miniconda3/envs/lnpy_test/bin/x86_64-conda_cos6-linux-gnu-cc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O2 -Wall -Wstrict-prototypes -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -pipe -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem /home/ajay/miniconda3/envs/lnpy_test/include -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /home/ajay/miniconda3/envs/lnpy_test/include -fPIC -Ilnpy/transform/src/gammatone -I/home/ajay/miniconda3/envs/lnpy_test/lib/python3.7/site-packages/numpy/core/include -I/home/ajay/miniconda3/envs/lnpy_test/lib/python3.7/site-packages/numpy/core/include -I/home/ajay/miniconda3/envs/lnpy_test/include/python3.7m -c lnpy/transform/wrap_gtfb.c -o build/temp.linux-x86_64-3.7/lnpy/transform/wrap_gtfb.o -MMD -MF build/temp.linux-x86_64-3.7/lnpy/transform/wrap_gtfb.o.d" failed with exit status 1

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.