A journal club for -omicsy things @ UCLA. Send me a paper if you'd like to suggest one, otherwise I will choose.
We meet at the Hammer Museum cafe Fridays at 5:30 for beer and science (entrance is free). If you're reading this, feel free to stop by.
We are modeled after Jeff Ross-Ibarra's REHAB, please check there for information on the format. In short, no one presents the paper and we jump in as soon as the beer arrives.
We have a mailing list here. Feel free to join or email me ([email protected]) for paper annoucements.
October 20th, 2017 He et al 2017. Unified Sequence-Based Association Tests Allowing for Multiple Functional Annotations and Meta-analysis of Noncoding Variation in Metabochip Data [blame Albert]
October 13th, 2017 Weissensteiner et al 2017. Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications [blame Daniel]
October 6th, 2017 Rubin, Barajas, and Furlan-Magaril et al 2017. Lineage-specific dynamic and pre-established enhancer–promoter contacts cooperate in terminal differentiation [blame James]
September 29th, 2017 Lareau and Aryee 2017. diffloop: a computational framework for identifying and analyzing differential DNA loops from sequencing data [blame Katie]
September 21st, 2017 Castel et al 2017. Modified penetrance of coding variants by cis-regulatory variation shapes human traits [blame James]
September 15th, 2017 Mostafavi et al 2017. Identifying genetic variants that affect viability in large cohorts [blame Arun]
August 4th, 2017 Cortes and Dendrou et al 2017. Bayesian analysis of genetic association across tree-structured routine healthcare data in the UK Biobank [blame Colin]
No journal club -- go to UCLA Computational Genomics Summer Institute instead.
June 30th, 2017 Hammerschlag et al 2017. Genome-wide association analysis of insomnia complaints identifies risk genes and genetic overlap with psychiatric and metabolic traits [blame Albert]
June 23rd, 2017 Boyle et al 2017. An Expanded View of Complex Traits: From Polygenic to Omnigenic [blame Catharine, James, Arun]
- Bonus: Goldstein 2009. Common Genetic Variation and Human Traits [blame James, Arun]
- Bonus: Rockman 2012. The QTN program and the alleles that matter for evolution: all that's gold does not glitter [blame Arun]
June 16th, 2017 McLaughlin et al 2017. Genetic correlation between amyotrophic lateral sclerosis and schizophrenia [blame Alex]
June 9th, 2017 Glodzik et al 2017. A somatic-mutational process recurrently duplicates germline susceptibility loci and tissue-specific super-enhancers in breast cancers [blame Mike]
June 2nd, 2017 Knouse et al 2016. Assessment of megabase-scale somatic copy number variation using single cell sequencing [blame Daniel]
May 25th, 2017 Mathieson et al 2015. Genome-wide patterns of selection in 230 ancient Eurasians [blame Arun] Note: date change
May 19th, 2017 No journal club -- go to Brewin' Talks! [blame Catharine]
May 12th, 2017 Pala and Zappala et al 2017. Population- and individual-specific regulatory variation in Sardinia [blame Arun]
May 5th, 2017 Corces et al 2017. Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution [blame Mike]
April 28th, 2017 Saleheen & Natarajan et al 2017. Human knockouts and phenotypic analysis in a cohort with a high rate of consanguinity [blame Alex]
April 21st, 2017 Yue et al 2017. Contrasting evolutionary genome dynamics between domesticated and wild yeasts [blame James]
April 14th, 2017: Chiang et al 2017. The impact of structural variation on human gene expression [blame Colin]
April 7th, 2017: Poplin et al 2016. Creating a universal SNP and small indel variant caller with deep neural networks [blame Arun]
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