First thing to do is update the config.json to point directly to the file path where your func gii files are stored.
Once done, then:
- if singularity installed:
. main
- If singularity NOT installed, but freesurfer installed:
. convert-func-to-nii.sh
- if neither are installed, ask Brad and he'll convert for you (or you can install either singularity/apptainer or freesurfer, whichever is easier)