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rna-seq-variant-calling

Functions to call variant in RNA-Seq with Mutect2, Varscan, and Vardict

rnaseqdrug

Gene isoforms as expression-based biomarkers predictive of drug response in vitro

rscriptsdepmap

My R Scripts to process DepMap Files

s4cmd

Super S3 command line tool

sambamba

Tools for working with SAM/BAM data

scout

VCF visualization interface

sebastiano

shinydepmap

A shiny-based web tool for interactive analysis of DepMap data

som_visualization_r

Some functions for visualizing output from the "kohonen" R library

somatic-benchmark

Tools for comparing somatic variant calling tools.

splitstackshape

R functions to split concatenated data, conveniently stack columns of data.frames, and conveniently reshape data.frames.

spngmessages

A tutorial on using Angular's ngMessages API

ssgsea2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

star-fusion

STAR-Fusion codebase

svm-rfe

An R implementation of the (multiple) Support Vector Machine Recursive Feature Elimination (mSVM-RFE) feature ranking algorithm

swirl_courses

:mortar_board: A collection of interactive courses for the swirl R package.

tdrmapper

the-complete-flask-mega-tutorial

The Complete Flask Mega tutotial by Miguel GrinBerg 2017

til

Today I Learned

trackviewer.documentation

documentation for trackViewer

trinity_ctat

uncover

Source for UNCOVER (Sarto Basso, Hochbaum, Vandin, RECOMB 2018)

wiggleplotr

A small R package to make sequencing read coverage plots in R.