baigal628 Goto Github PK

addseq

Angelicin modification based long-read epigenetic profiling method

addseq_manuscript

Chromatin accessibility profiling with small molecule intercalation and long-read sequencing

baigal628.github.io

Personal Webpage

bioinfo-combio

The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/

chips

A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data

cidc-ngs-pipeline-api

Specifications and documentation related to CIMAC-CIDC NGS pipelines: WES, RNAseq, TCRseq, ATACseq

computation_wiki

Tommy's computation wiki

liulab-dfci.github.io

Know more about Shirley Liu lab at

machine-learning-articles

🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.

maestro

Single-cell Transcriptome and Regulome Analysis Pipeline

maestro_documentation

MAESTRO documentation website

minimaestro

A minimal version if MAESTRO which only support pre-processing steps.

modbamvisualization

Visualizing modifications on .bam file

musicvisualr

A multi-sample single-cell data visualization toolkit

nemo

a deep neural network model for mapping modifications in nanopore Long-read sequencing data

ngs_dataanalysis_maize-corn-

pyflow-single-cell

single-cell RNAseq ATACseq processing pipeline

pymol_protein-3d-structure-display

This is a bioinformatic project that uses PyMOL to regenerate protein 3-D structure and then mark conserved sequences.

rima_pipeline

rna-seq_differential_expression

This Tutorial Provides a differential gene expression analysis workflow based on Salmon and DESeq2.

scrna_pipeline

slurmpy

submit jobs to slurm in Odyssey HPC

starter-hugo-academic

tutorial_uploaddatatoega

This is a step by step illustration of how I uploads data to EGA

visualizirr