Gali Bai's Projects
Angelicin modification based long-read epigenetic profiling method
Chromatin accessibility profiling with small molecule intercalation and long-read sequencing
Personal Webpage
The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
A Snakemake pipeline for quality control and reproducible processing of chromatin profiling data
Specifications and documentation related to CIMAC-CIDC NGS pipelines: WES, RNAseq, TCRseq, ATACseq
Tommy's computation wiki
Know more about Shirley Liu lab at
🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.
Single-cell Transcriptome and Regulome Analysis Pipeline
MAESTRO documentation website
A minimal version if MAESTRO which only support pre-processing steps.
Visualizing modifications on .bam file
A multi-sample single-cell data visualization toolkit
a deep neural network model for mapping modifications in nanopore Long-read sequencing data
single-cell RNAseq ATACseq processing pipeline
This is a bioinformatic project that uses PyMOL to regenerate protein 3-D structure and then mark conserved sequences.
This Tutorial Provides a differential gene expression analysis workflow based on Salmon and DESeq2.
submit jobs to slurm in Odyssey HPC
This is a step by step illustration of how I uploads data to EGA