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baiyuanxiang's Projects

freebayes icon freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

gatk icon gatk

Official code repository for GATK versions 4 and up

genomics icon genomics

a collection of scripts and notes related to genomics and bioinformatics

geph2 icon geph2

Geph (迷霧通) is a modular Internet censorship circumvention system designed specifically to deal with national filtering.

ggplot2 icon ggplot2

An implementation of the Grammar of Graphics in R

giab_data_indexes icon giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.

gistic icon gistic

Setup for creating a gistic docker container

gms icon gms

The Genome Modeling System installer

gotop icon gotop

A terminal based graphical activity monitor inspired by gtop and vtop

gridstudio icon gridstudio

Grid studio is a web-based spreadsheet application with full integration of the Python programming language.

gtz icon gtz

A high performance and compression ratio compressor, powered by GTXLab of Genetalks.

hapseq icon hapseq

Collection of Perl and Java Programmes for processing BAM files to obtain SNP Haplotypes

hexo-theme-fluid icon hexo-theme-fluid

:ocean: 一款 Material Design 风格的 Hexo 主题 / An elegant Material-Design theme for Hexo

icages icon icages

iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient

icgc-get icon icgc-get

Universal download client for ICGC data residing in various environments

igv-reports icon igv-reports

Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.

infiniumpurify icon infiniumpurify

Tumor Purity Estimation by hm450k (Author: Naiqing Zhang at Bioinformatics 2016)

installr icon installr

Functions for installing softwares from within R

ionnipt icon ionnipt

ThermoFisher Ion Torrent plugin to detect fetal trisomies and estimate fetal fraction

karyoploter icon karyoploter

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

kent icon kent

UCSC Genome Browser source tree. Stable branch: "beta".

lancet icon lancet

Microassembly based somatic variant caller for NGS data

leetcodeanimation icon leetcodeanimation

Demonstrate all the questions on LeetCode in the form of animation.(用动画的形式呈现解LeetCode题目的思路)

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