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2019-gemam-dna-methylation-plots

Codes for plotting of DNA methylation data

alzheimers_dnam

Epigenome-wide analysis of DNA methylation from Alzheimer's patients and unaffected controls

bag-excel-scraper

An R script to download the BAG Excel file on COVID19, transform the data and bring it into the target data model. Quickly mashed together for @rob_salzer: https://twitter.com/rob_salzer/status/1245054668914470913

bat

BAT - Bisulfite Analyss Toolkit

bed

Bayesian Epiallele Detection (BED)

bgee_pipeline

Source code of the Bgee pipeline

bioconda-recipes

Conda recipes for the bioconda channel.

bioconda-utils

Utilities for building and managing bioconda recipes

biseq

bisulfite-seq-data-analysis-pipeline

This repo contains details of Bisulfite Processing Pipeline

book

bs_seq_analysis

bisulfite sequencing calling methylation, DMRs and overlap with genes

clusterprofshinygsea

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

cpgmatrixplotter

package to plot CpG matrix data as circles spaces proportionally apart

ctx12_epigenetics

data_reporting

Script for visualising and reporting data

dmrichr

An executable and package for the statistical analysis and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

dmrseq

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

dss

使用DSS计算差异，以及基因注释

epigenetics_workflow

Pipeline for RRBS data analysis without a reference genome

epigenomics_cwl

SCREW: A Reproducible Workflow for Single-Cell Epigenomics

epurate

A clean R Markdown template for your reports

fluentgenomics

plyranges and tximeta case study

genomation

R package for genomic feature analysis and visualization

genomicdistributionsdata

Data for GenomicDistributions R package

gwas_meta_analysis

Pipeline for meta-analysis of GWAS data

icfsr2019

Code for ICFSR 2019 presentation

iqlearn

Simple machine learning library in Java

jaffelab

R package with commonly used functions by the Jaffe lab

janitor

simple tools for data cleaning in R