Giter Site home page Giter Site logo

cvu's Introduction

Connectome Visualization Utility version 0.5.1
Author: Roan LaPlante

DESCRIPTION

The Connectome Visualization Utility is a free and open source software project
designed for the visualization of multi-modal, abstract brain networks. To
facilitate visualization of network topology and modularity, cvu additionally
interfaces with graph theory tools.

The program is designed for scientists, but to run as a standalone application.

COPYRIGHT INFORMATION

This program strictly observes the tenets of fundamentalist Theravada Mahasi 
style Buddhism.  Any use of this program in violation of these aforementioned 
tenets or in violation of the principles described in the Visuddhimagga Sutta is
strictly prohibited and punishable by extensive Mahayana style practice.

Note that the observation of the tenets of fundamentalist Theravada Mahasi 
style Buddhism and the Visuddhimagga Sutta is optional as long as the terms and
conditions of the GNU GPLv3+ are upheld.

DEPENDENCIES

These dependencies are satisfied by installing a scientific python distribution
such as Canopy or anaconda:

matplotlib -- plotting library
chaco -- interactive plotting library
numpy -- math library
mayavi -- interactive 3D visualization library

These dependencies are *required* and must be manually installed into your
python distribution. Typically this is as simple as typing 'pip install package'

mne -- MNE python, a broad library for MNE processing that is used in CVU to
	manipulate surface and parcellation files.
bctpy -- a graph theory library

Optional dependencies:

nibabel -- nibabel is a neuroimaging library that is used to locate subcortical
	structures. Without nibabel, subcortical structures may not appear in any
	parcellations.
freesurfer -- freesurfer is a very powerful set of tools to do automatic
	segmentation and parcellation. CVU calls freesurfer commands to register
	tractography to the structural space. Without freesurfer, tractography
	cannot be visualized.

cvu's People

Contributors

aestrivex avatar

Watchers

Bauke van der Velde avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.