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Name: Benbo Gao
Type: User
Company: Biogen Inc
Name: Benbo Gao
Type: User
Company: Biogen Inc
iLearnPlus is the first machine-learning platform with both graphical- and web-based user interface that enables the construction of automated machine-learning pipelines for computational analysis and predictions using nucleic acid and protein sequences.
Web-based molecule sketcher
Comprehensive library for fast, GPU accelerated molecular gridding for deep learning workflows
A library/plugin for handling 3D structural molecular data (not only) in the browser.
A deep learning model for small molecule drug discovery and cheminformatics based on SMILES
Molecular AutoEncoder in PyTorch
molfeat - the hub for all your molecular featurizers
Repository for MolFormer
Small library for conversion of pdb files into numpy grids
a molecular descriptor calculator
Jupyter widget to interactively view molecular structures and trajectories
Data visualisation web components for the life sciences.
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Open Drug Discovery Toolkit
Prize-Collecting Steiner Forests for Interactomes
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
Containerised components for cheminformatics and computational chemistry
Annotating cysteines part of disulfides and metal binding sites in AlphaFold2 predictions
Source code for the paper: Daberdaku S. 2019. Identification of protein pockets and cavities by Euclidean Distance Transform. PeerJ Preprints 7:e27314v2 https://doi.org/10.7287/peerj.preprints.27314v2
POLYGON VAE For de novo Polypharmacology
PROPKA predicts the pKa values of ionizable groups in proteins and protein-ligand complexes based in the 3D structure.
Interactive tool for Phosphoproteomics
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
Collected scripts for Pymol
Multi-Input Deep Neural Networks with PyTorch-Lightning - Combine Image and Tabular Data
Scripts for assisting in modeling quantitative structure activity relationships from 2D chemical data
Quickomics: exploring omics data in an intuitive, interactive and informative manner
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.