Comments (1)
bebatut
commented on September 24, 2024
1
Should be fixed with #17
$ enasearch retrieve_run_report --accession PRJNA275974 --fields run_accession --fields fastq_ftp
run_accession fastq_ftp
SRR1922792 ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/002/SRR1922792/SRR1922792_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/002/SRR1922792/SRR1922792_2.fastq.gz
SRR1922793 ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/003/SRR1922793/SRR1922793_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/003/SRR1922793/SRR1922793_2.fastq.gz
SRR1922794 ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/004/SRR1922794/SRR1922794_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/004/SRR1922794/SRR1922794_2.fastq.gz
SRR1922795 ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/005/SRR1922795/SRR1922795_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/005/SRR1922795/SRR1922795_2.fastq.gz
SRR1922796 ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/006/SRR1922796/SRR1922796_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/006/SRR1922796/SRR1922796_2.fastq.gz
SRR1922797 ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/007/SRR1922797/SRR1922797_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR192/007/SRR1922797/SRR1922797_2.fastq.gz
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Related Issues (20)
- Support comma separated --fields a,b,c HOT 1
- Default to ALL fields in --fields? HOT 1
- Friendly handling of illegal --fields HOT 1
- No functional claims of the software HOT 1
- No statement of need HOT 1
- No example usage HOT 1
- The functionality documentation is not clear HOT 2
- No JOSS paper file HOT 1
- click seems to need string message
- Search for taxa that appear on multiple levels
- trouble filtering fields to return
- Conda installation only allows Python 2 HOT 2
- Display type is either not supported or entry is not found. HOT 1
- Remove support of Python 2 HOT 1
- Migrate to CircleCI or GitHub action
- Update data
- ValueError: A boolean value must be only 'true' or 'false' HOT 1
- requests.exceptions.HTTPError: 500 Server Error HOT 2
- How do I replicate this URL via this module? HOT 2
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