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bebatut avatar bebatut commented on June 17, 2024

Hi @nigiord,

Thanks for using enasearch.

This issue is known and I am sorry for that. Click (used for the command line interface) is not supported for python 3 in conda so I could not make enasearch conda package for python 3.
You can do also a conda environment with python 3 and then install enasearch with pip install inside the environment. Pip package of enasearch supports python 3.

I hope it will help you

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nigiord avatar nigiord commented on June 17, 2024

Hi @bebatut,

Thank you for your answer. I'm confused because it seems to me Click has a Python3 version in conda: https://anaconda.org/anaconda/click/files

It can be installed using:

$ conda install -c anaconda click
Solving environment: done

## Package Plan ##

  environment location: /home/giordano-n/.miniconda3/envs/test_enasearch

  added / updated specs: 
    - click


The following packages will be downloaded:

   […]

The following NEW packages will be INSTALLED:

  […]
    click:           7.0-py37_0              anaconda
 […]

Are you sure Click is the problematic package?

This is not a big issue since, as you said, enasearch-py3 can be installed and used in a conda environment through pip and setup.py. I just think it would be cleaner to have a full conda integration for Python 3.

Cheers,
Nils

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