benbruyneel/proteindiscover

Provides the ability to read results produced by the Proteome Discoverer software of Thermo Scientific

proteinDiscover

R Package that provides the ability to read results from .pdResult (.msf) files produced by the Proteome Discoverer software of Thermo Scientific

proteinDiscover manual

proteinDiscover news 22/05/30

proteinDiscover news 23/10/31

proteinDiscoverExtra

Install with the command:

devtools::install_github("BenBruyneel/proteinDiscover")

Update (v0.10.0) : revisited all functions and attempted to make argument names etc more consistent. Please note that this can have consequences for older code using these functions

Update (v0.11.0) : newer versions of Proteome Discoverer (latest version I have seen is v3.1) have a different approach to storing some data. Most of the tables are still in the .pdResult files, but (MS2 & MS3) spectrum information is stored in the .pdResultDetails files. Please note that the current implementation of all spectrum functions in this package is not final.

Work in progress!

March 13, 2024