RNA Motif generator and finder, code and experiments from my Bioinformatics Master's thesis.
- the SeqAn library (tested with release 2.3.0) and its usual dependencies like zlib and OpenMP for parallel folding.
- the ViennaRNA headers and some compiled library like
libRNA.a
The rest is self-contained in the repository.
The ViennaRNA C library sometimes seems to crash when using multiple threads for folding (i.e. very simply folding multiple structures in parallel, not even using multiple threads to fold one structure). The cause is unclear since I don't think that I share state between threads, but maybe something leaks internally in the ViennaRNA library.