bfdykstra/extract-scripts

Compilation of extracts scripts for various datasets as well as related pre/post processing scripts

extract-scripts

##ndvi_mosaic Scripts for creating a job on the Sciclone cluster which preprocesses/mosaics contemporary GIMMS NDVI data in parallel

##ndvi_extract Scripts for creating a job on the Sciclone cluster to run extracts on mosaic outputs of contemporary data

##historic_ndvi_prep Scripts for creating a job on the Sciclone cluster to process historic GIMMS NDVI data (1981-2003)

##historic_ndvi_extract Scripts for creating a job on the Sciclone cluster to run extracts on processed historic data

##ndvi_merge Scripts for creating a job on the Sciclone cluster to merge extract outputs for both contemporary and historic data (change variable in runscripts.py to choose data type)

##atap_extract Scripts for creating a job on the Sciclone cluster to run extracts on atap (air temperature and precipitation) datasets

##atap_merge Scripts for creating a job on the Sciclone cluster to merge extract outputs for atap datasets (change variable in runscripts.py to choose air temp or precip)

##utility Various scripts for managing output data, local tasks or anything not requiring a full Sciclone job.

• ndvi_max.R : gets yearly maximum from merged ndvi extract outputs
• gpw_extract.R : Rscript for running local extract on GPWv3 data
• gpw_extract_merge.R : merge gpw extract
• generic_extract.R : generic extract Rscript which takes user inputs
• atap_grid.sh : generate rasters from origin atap data
• other scripts : see script comments for details

##ndvi_original
Contains original Rscripts for downloading GIMMS NDVI data, preprocessing, creating mosaic and extracting (serial scripts)