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Hoda's Projects

al-folio icon al-folio

A beautiful, simple, clean, and responsive Jekyll theme for academics

antepiseeker2 icon antepiseeker2

Relating epistasis detection to biological pathway analysis using ant colony optimization

bokeh icon bokeh

Interactive Web Plotting for Python

correl_bayesopt icon correl_bayesopt

Code for Bayesian Pareto frontier learning for correlated expensive objectives

d3-js icon d3-js

Some Visualisations using D3js

de_sim icon de_sim

Python-based object-oriented discrete-event simulation tool for complex, data-driven modeling

deap icon deap

Distributed Evolutionary Algorithms in Python

drug-target icon drug-target

Summer 2014 project for drug-target pathway analysis

ganpa icon ganpa

Gene Association Network-based Pathway Analysis

generecognition icon generecognition

Capturing gene-drug interactions from text and audio for pathway analysis of cancer genomics.

ifad icon ifad

An integrative factor analysis model for drug-pathway

incubator-predictionio icon incubator-predictionio

PredictionIO, a machine learning server for developers and ML engineers. Built on Apache Spark, HBase and Spray.

ipad icon ipad

Efficient drug-pathway association analysis via integrative penalized matrix decomposition

jmetalcpp icon jmetalcpp

A C++ version of jMetal, a Java framework aimed at multi-objective optimization with metaheuristics.

libpgm icon libpgm

A library for creating and using probabilistic graphical models

lightfm icon lightfm

A Python implementation of LightFM, a hybrid recommendation algorithm.

metapath icon metapath

Perform the Meta-Analysis for Pathway Enrichment analysis

metapathways icon metapathways

A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information

micro icon micro

A tool for rapid discovery of interesting miRNA/protein interactions.

next-personal-website icon next-personal-website

:computer: Personal website using JavaScript, Next.js, React, SWR, Tailwind CSS, Jest and React Testing Library.

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