biccn Goto Github PK

2020-biccn-portals-workshop

This site contains the material and documentation supporting the BICCN portals workshop held on 2020.

anatomy-transcriptomics-portal-wiki

This repo describes the Anatomy and Transcriptomics joint portal comprised of the Cold Spring Harbor Laboratory Brain Architecture portal and the Broad Institute's Single Cell Portal.

anatomycompanion

bcdc-documentation

Documentation for BCDC

bcdc-metadata

Interim repository for BCDC metadata per quarter.

biccn-infrastructure

Documentation about BICCN Infrastructure and Data Policies

biccn.github.io

ccf_registration_2020

CCF Registration Competition 2020

cell-locator

manually align specimens to annotated 3D spaces

cellcensusmotorcortex

Resources associated with "A multimodal cell census and atlas of the mammalian primary motor cortex"

controlled-vocabularies.github.io

morphology-inventory-prototype

Repository to share document, example code and data towards creating a standardized whole brain morphology inventory

nemo-broad-demo-2018

This demo describes data flow between NeMO and the Broad

nemo-terra-cloud-computing

The wiki to this repo describes the joint NeMO (Univ Maryland) and Terra (Broad) Cloud Computing Environment for the BCDC.

osdf

Open Science Data Framework (OSDF)

probe_selection

Tools for for selecting probes for in situ transcriptomics using scRNA-Seq data

quarterly_submission_receipts

Repository for Quarterly Submission Receipts.

swc_specification

Information about the SWC file specification

terra-import-builder

Cloud Function for staging JSON payloads in GCS for use by Terra's pull-based import API.

tmn

Repository for work on neuroscience techniques ontology development.