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Documentation about BICCN Infrastructure and Data Policies
This issue is for discussion around Data Linkage for Patch-seq. The goal is to determine the requirements for Data Linkage across archives.
Please feel free to comment and add to the discussion.
Patch-Seq consists of data that will be housed at 3 archives:
Archive | Data Type | File Type (Minimum) | Note |
---|---|---|---|
DANDI | Patch Ephys | NWB | |
BIL | Morphology | SWC | Images optional |
NEMO | Transcriptomics | Fastq |
Here is a first use case to support:
Need help with moving charters into charter folder
It would be great to have a concise and centralized policy for data levels.
Consortium should decide on a standard for hashing methods.
There are multiple strategies for DOI support for manuscripts. We need to decide on appropriate strategies to group data for DOIs at each archive.
TYPE of Data | SETS of data | RELATIONSHIP to Paper | LOCATION of Data |
---|---|---|---|
Raw data (e.g., fastq, NWB, Stitched images) | Subset of “project” explicitly reported to date | All applicable data, whether explicitly reported in paper or not | Within one archive |
Processed Data (e.g., BAM/counts, registered images) | Subset of “project” that is all MOp data to date for that project | Data reported to whole paper | Across multiple archives |
Annotations | Whole “project” to date (including non-MOp) | Data per figure | At other sites (e.g., Neuromorpho, Mouse Brain Architecture, etc) |
Combinations of subsets of projects | Data per analysis | ||
Combinations of projects to date |
It would be great to have a policy in the repo a consistent description of data levels, the expected level of ingestion (per assay group).
It is important we codify an embargo policy in GitHub here so it is public and centralized.
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