<a href="https://app.circleci.com/pipelines/github/bids-apps/aa/32/workflows/44b8665c-

<div class="snippet-clipboard-content notranslate position-relative overflow-auto" data-snippet-clip

Fixed by <a class="commit-link" data-hovercard-type="commit" data-hovercard-url="https

It is still complaining. <a href="https://app.circleci.com/pipelines

invalid freesurfer license in circle ci about aa HOT 7 OPEN

bids-apps commented on July 1, 2024

invalid freesurfer license in circle ci

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Comments (7)

Remi-Gau commented on July 1, 2024

ERROR: Invalid FreeSurfer license key found in license file /opt/freesurfer/license.txt
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu/registration.html to 
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.

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tiborauer commented on July 1, 2024

Fixed by 17f9b30

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Remi-Gau commented on July 1, 2024

It is still complaining.

https://app.circleci.com/pipelines/github/bids-apps/aa/34/workflows/bc49cc1e-3eb6-4381-8d02-d5246f0c1978/jobs/249

😭

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tiborauer commented on July 1, 2024

I think the FS version was old. Let's hope it works now.

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Remi-Gau commented on July 1, 2024

Fingers crossed.

By the way it may be worth trying to run this on datasets that have pre computed freesurfer output because it may otherwise always exceed the compute time allowed in circle ci.

Not sure if aa can easily accommodate this possibility.

Also no rush. Fixing the CI of all the bids app is slow moving target.

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tiborauer commented on July 1, 2024

Sure, I can take partially processed datasets as input. However, FreeSurfer processing is not part of the current workflow anyway.

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Remi-Gau commented on July 1, 2024

Ah my bad.
I saw freesurfer things and made assumptions.

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