bio2bel Goto Github PK
Name: Bio2BEL
Type: Organization
Bio: Enabling Biological Expression Language to act as a semantic integration layer for multi-modal and multi-scale data sets in the life sciences
Name: Bio2BEL
Type: Organization
Bio: Enabling Biological Expression Language to act as a semantic integration layer for multi-modal and multi-scale data sets in the life sciences
Convert differential gene expression signatures for diseases from ADEPTUS to BEL
A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)
Artwork for bio2bel
A cookiecutter bio2bel repositories
LaTeX source for "Bio2BEL: Integration of Structured Knowledge with Biological Expression Language"
Supplementary information for the Bio2BEL (2019) manuscript
Notebooks demonstrating the usage of Bio2BEL packages
A Bio2BEL package for converting BMKS-react to BEL
A Bio2BEL package for converting Chemical Entities of Biological Interest (ChEBI) to BEL
A Bio2BEL package for converting biochemical inhibition and binding information in ChEMBL to BEL
Convert the Clinical Measurement Ontology to BEL
Nomenclature and definitions of protein complexes in BEL
Public differential gene expression profiles from http://amp.pharm.mssm.edu/CREEDS/
A Bio2BEL package for converting the Comparative Toxicogenomics Database (CTD) to BEL
Converting dbSNP mutation information to BEL
Disease-disease relationships from Menche et al.
A Bio2BEL package for the Disease Ontology (http://www.disease-ontology.org)
A Bio2BEL package for DrugBank (https://www.drugbank.ca)
Experimental Factor Ontology (EFO) to BEL
A Bio2BEL package for converting Entrez and HomoloGene to BEL
Convert curated assays from ExCAPE-DB to BEL
A Bio2BEL package for converting ExPASy to BEL
Convert FamPlex to BEL
A Bio2BEL package for the terminology from FlyBase (http://flybase.org/)
[DEPRECATED] HGNC Gene Families to BEL
A Bio2BEL package for converting the Gene Ontology (GO) to BEL
Hugo Gene Nomenclature Consortium (HGNC) to BEL
Convert PPIs in HIPPIE to BEL
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