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dynamichmcmodels.jl

DynamicHMC versions of StatisticalRethinking models

enstop

Ensemble topic modelling with pLSA

example-rnaseq

genbank-tools

BioPython tools for merging and editing genbank files.

genefishing

genentechrnaseqexample

giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.

gridss

GRIDSS: the Genomic Rearrangement IDentification Software Suite

haarp

High throughput screening Analysis And Retrieval of Putative hits

hdbscan

A high performance implementation of HDBSCAN clustering.

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

htmad

High throughput microbial community dereplication analysis using MALDI-TOF MS

hyperbolic-graph-generator

A set of tools to generate synthetic graphs embedded into a hyperbolic space and to test the greedy routing.

ipsa

This is IPSA package light version

ismb_poster_2018

Poster development for ISMB 2018

juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

kallisto

Near-optimal RNA-Seq quantification

kb_python

A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing

lancet

Microassembly based somatic variant caller for NGS data

melissa

Bayesian Clustering and Imputation of Single Cell Methylomes

mentoring_materials

metacell

Metacell - Single-cell mRNA Analysis

misc_docs

miser

convenience package for loading IDATs off of GEO (short for "sesamizer")

mmg434

Repo containing teaching documentation and materials for NGS sessions in MMG 434

mprsq

Massively Parallel RNA-seq Project

mtseeker

mitochondrial variant analysis tools

mtseekerdata

data for MTseeker

myfirstrepo

This is for VAIGS 2021 bioinformatics course git session

ngs-tools

Reusable tools for working with next-generation sequencing (NGS) data