Comments (2)
bjclavijo
commented on August 12, 2024
We are working on a faster step1 version, but 1T of reads is probably going to kill other parts of the software anyway. Can you comment on genome and coverage? It is either a super challenging project that I would love to hear about or you can probably just downsample a lot...
from w2rap-contigger.
sanjitsbatra
commented on August 12, 2024
Is there any way to parallelize this process? It would seem that one could seek blocks in parallel and load in memory, right?
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Related Issues (20)
- Step 1 Speed for w2rap contigger HOT 3
- Illegal involution value HOT 3
- Step 3 crashed HOT 1
- K parameter determination HOT 5
- denoising Illumina reads HOT 1
- Check step2 counting using large number of batches
- Having trouble with preoccupied kmers HOT 7
- Resume checkpoints in w2rap-contigger? HOT 2
- errors when compiling with gcc-8 in MacOS HOT 1
- w2rap-contigger memory issues / advices to run w2rap HOT 9
- Segfault during Step 6: removing small components HOT 7
- Read lengths and large K HOT 1
- Installation error HOT 6
- Segmentation fault in Step 5 HOT 1
- Can w2rap-contigger use for non-PCR-free NGS assembling? HOT 1
- More details on w2rap-contigger step 5 needed - run with 100bp PE short reads (Illumina) HOT 1
- No error message (34045 Aborted) HOT 2
- Step 3 crash HOT 1
- help with compiling on Mac OS
- step2 crashed
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