Comments (2)
msahraeian
commented on July 16, 2024
@jerryguintivano
Happy to see your interest in RNACocktail.
Currently RNACocktail supports GATK 3.5. You can find that version at:
https://software.broadinstitute.org/gatk/download/archive
https://software.broadinstitute.org/gatk/download/auth?package=GATK-archive&version=3.5-0-g36282e4
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msahraeian
commented on July 16, 2024
@jerryguintivano
We have upgraded tools to latest version at #17 (GATK 4 is also supported now).
The new docker image (v0.3.0) have these tools pre-installed.
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Related Issues (12)
- Exception: Unable to detect format from ['SNV;ENSG00000225630', '1', '+', '50', '0'] HOT 10
- GIREMI failed! HOT 10
- Error in run_editing STEP 10 HOT 3
- Keep moving HOT 4
- docker test fails on fusioncatcher in 0.3.0 HOT 1
- Transcript quantification of pacbio long reads (ccs)
- option '-k' is only recognised by salmon quant of salmon version 0.11.0 but not above
- samtools version 1.3 or higher incompatible HOT 1
- IOError: [Errno 36] File name too long: HOT 2
- hisat2_jun2bed.py error HOT 1
- Cannot start run_rnacocktail.py HOT 3
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