Comments (3)
I realized that according to giremi documents, giremi.pl did produce *.res files. However, in defaults.py, GIREMI was assigned with "giremi". So my guess is that this value should be "giremi.pl"? So it could use the R script to predict RNA editing and output *.res files?
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OK, I figure out that I was using giremi.zip downloaded from https://www.ibp.ucla.edu/research/xiao/GIREMI.html. Apparently, it's a bit different with github version, because it uses giremi.pl while github version uses only "giremi".
Sorry for bothering you.
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@thestarocean happy to see your interest in RNACocktail. That's great that you have already resolved the issue.
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Related Issues (12)
- Exception: Unable to detect format from ['SNV;ENSG00000225630', '1', '+', '50', '0'] HOT 10
- Variant Calling HOT 2
- GIREMI failed! HOT 10
- Keep moving HOT 4
- docker test fails on fusioncatcher in 0.3.0 HOT 1
- Transcript quantification of pacbio long reads (ccs)
- option '-k' is only recognised by salmon quant of salmon version 0.11.0 but not above
- samtools version 1.3 or higher incompatible HOT 1
- IOError: [Errno 36] File name too long: HOT 2
- hisat2_jun2bed.py error HOT 1
- Cannot start run_rnacocktail.py HOT 3
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