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Add Blast API about bionode-ncbi HOT 2 CLOSED

bionode avatar bionode commented on June 23, 2024
Add Blast API

from bionode-ncbi.

Comments (2)

thejmazz avatar thejmazz commented on June 23, 2024

Hi @Fohlen, have you seen bionode-blast?

Looks like you already encountered some of the inconveniences of the Blast API yourself :)

Perhaps take a look at bionode-blast and see if there are any differences between your approach and ours? (I actually uncompressed JSON instead of parsing XML - forget whether or not there was a real reason for doing that). Perhaps eventually your Stdlib function would just declare params and pass them through to a bionode module?

Cheers!

from bionode-ncbi.

Fohlen avatar Fohlen commented on June 23, 2024

Hi @thejmazz
I probably didn't see the module, because it is not included in the docs yet!
I used XML there because the JSON2 module will create an archive to download, whereas the XML API makes it available directly.

Probably I could enhance the current bionode-blast utility 👍

from bionode-ncbi.

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