Comments (5)
Thank you very much for the video. :)
If you add the --pretty
flag you should get the expected progress bar:
bionode-ncbi download assembly human --pretty
Bionode benefits from its streaming capabilities, making it composable with other command line utilities through Unix pipes. In the case of download, I guess the decision of keeping the output in NDJSON by default was to keep the interface coherent with the behaviour of the rest of the CLI.
I hope this clarifies a bit your issue.
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Hi @Fohlen, I think I don't understand exactly what you mean. There is already a download progress bar when using the download
subcommand. Where would you like to see this feature?
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Hey @Istar-Eldritch for [email protected]
on OSX High Sierra this is not exactly the case.
I do get all the file names and everything printed in my console when using the download subcommand.
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Interesting... Would you be able to provider a recording of the case? The output of https://asciinema.org/ or a gif recorder would come handy to see the reproduction details. I don't have a mac with me now but I'll try to reproduce it Monday.
from bionode-ncbi.
Hey @Istar-Eldritch, have a look here
https://asciinema.org/a/dq6MNldxau5fBMXrJL5AdbgRl
This ofc goes on and on for the entire archive 🚀
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Related Issues (20)
- Implement efetch API
- Download the GFF file of the Cycas taitungensis mitochondrion HOT 9
- Uncaught, unspecified "error" event HOT 1
- How to look up metadata for an SRR file HOT 1
- Tests are broken because of NCBI side metadata changes (again) HOT 2
- rna_from_genomic instead of genomic.fna
- geo is not searchable HOT 5
- download in the examples printing too much info HOT 3
- We need a smaller assembly from NCBI for testing HOT 3
- Git rid of git-lfs
- Error handling when NCBI connection is lost HOT 4
- User-friendly CLI
- Modularize lib structure.
- Output some warning to terminal when there is no output
- Add Blast API HOT 2
- Downloading one run download the whole Bioproject
- TypeError: Cannot create property 'Run' on string ' ' HOT 1
- Dependencies error: Prototype Pollution (lodash dependencies)
- Unexpected error when running 'bionode' HOT 4
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