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jenkins-update-center

BioUno Jenkins update center

jmol-plugin

Jmol Plug-in

mega-pairwise-distance-matrix2column

MEGA pairwise distance matrix2column

minimal-mistakes

:triangular_ruler: A flexible two-column Jekyll theme. Perfect for personal sites, blogs, and portfolios hosted on GitHub or your own server.

mrbayes-plugin

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. MrBayes uses Markov chain Monte Carlo (MCMC) methods to estimate the posterior distribution of model parameters.

nodelabelparameter-plugin

a jenkins plugin supporting dynamic label assignment

pbs-ansible

An Ansible + Vagrant playbook to set up a PBS Server

pbs-java-api

PBS Java API

pbs-plugin

Jenkins PBS plug-in

pbs4java

Fork of pbs4java

phageparser

provtoolbox

Java toolbox to create and convert W3C PROV data model representations

r-plugin

r-plugin

r-sandbox

R Sandbox

reproducibility-guide

scriptler-plugin

Jenkins scriptler plugin

simpleannotationserver

A simple IIIF and Mirador compatiable Annotation Server

structure-extended-configuration-plugin

The program structure is a free software package for using multi-locus genotype data to investigate population structure. Its uses include inferring the presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. It can be applied to most of the commonly-used genetic markers, including SNPs, microsatellites, RFLPs and AFLPs. The basic algorithm was described by Pritchard, Stephens & Donnelly (2000). Extensions to the method were published by Falush, Stephens and Pritchard (2003), and (2007) and Hubisz, Falush, Stephens and Pritchard (2009).

structure-harvester-plugin

Structure Harvester plug-in

structure-pipeline

Pipeline to run structure on multiple values of K, summarize results with CLUMPP, and create barplot in R

structure-plugin

Structure Plug-in

uno-choice-plugin

This plug-in is being maintained in the Jenkins community now, as Active Choices Plug-in

update-sites-manager

Jenkins plugin to manage UpdateSites, where Jenkins accesses in order to retrieve plugins.